View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19510_high_14 (Length: 447)
Name: NF19510_high_14
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19510_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 9 - 417
Target Start/End: Original strand, 33039607 - 33040015
Alignment:
| Q |
9 |
gattatactctcaactgagatagtattagaaattttaaattctgtgacatggttggtttttaatcaattaaatatattcttgccttataattatttacaa |
108 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
33039607 |
gattacactctcaactgagatagtattagaaattttaaattctgtgacatggttggtttttaatcaattaaatatattcttgctttataattatttccaa |
33039706 |
T |
|
| Q |
109 |
taaacattttggttagtgttgtttagttagagtccattaaagatactctcagttttgataagtattcatgatgataatgtctttttctattttctaatta |
208 |
Q |
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| T |
33039707 |
taaacattttagttagtgttgtttagttagagtccactaaagatactctcagttttgataagtattcatgatgataatgtctttttctattttctaatta |
33039806 |
T |
|
| Q |
209 |
gtgtctaacacgtgttcatgattccaatttattggagagcttcccctttttaagcaattaaactttgtaatacgcagaactgatttttccatattaaaat |
308 |
Q |
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| T |
33039807 |
gtgtctaacacgtgttcatgattccaatttattggagagcttcccctttttaagtaattaaactttgtaatacgcagaactgatttttccatattgaaat |
33039906 |
T |
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| Q |
309 |
taaccacttaattatccattgattttgaattttagataacaattattattggtcagatatcaatggcaggtgttattgggaggatattaaacttaggaaa |
408 |
Q |
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| T |
33039907 |
taaccacttaattatccattgattttgaattttagataacaattattattggtcagatatcaatggcatgtgttattgggaggatattaaacttaggaaa |
33040006 |
T |
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| Q |
409 |
atgttagag |
417 |
Q |
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||||||||| |
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| T |
33040007 |
atgttagag |
33040015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 9 - 341
Target Start/End: Original strand, 39953389 - 39953731
Alignment:
| Q |
9 |
gattatactctcaactgagatagtattagaaattttaaattctgtgacatggttggttttta--atcaattaaatatattct----------tgccttat |
96 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||| |||| |
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| T |
39953389 |
gattacactctcaactgagatagtattagaaattttaaattctgtgactaaattggtttttataatcaattaaatatattctcatgcttccttgctttat |
39953488 |
T |
|
| Q |
97 |
aattatttacaataaacattttggttagtgttgtttagttagagtccattaaagatactctcagttttgataagtattcatgatgataatgtctttttct |
196 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||| | ||||||||| ||||||||| |||||||||||| ||||||||||||||| |
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| T |
39953489 |
aattatttaccataaacattttagttagtgttgtttagttagagtccac-agagatactcttagttttgatgagtattcatgattataatgtctttttct |
39953587 |
T |
|
| Q |
197 |
attttctaattagtgtctaacacgtgttcatgattccaatttattggagagcttcccctttttaagcaattaaactttgtaatacgcagaactgattttt |
296 |
Q |
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|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||| |||||||| ||||||||||||| |
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| T |
39953588 |
atgttctaattagtgtctaacacgtgttcattattccaatttattggagagcttccccttttt-agtaattaaacttcgtaatacgtagaactgattttt |
39953686 |
T |
|
| Q |
297 |
ccatattaaaattaaccacttaattatccattgattttgaatttt |
341 |
Q |
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|| |||| |||||||| |||||||||||||||| |||||||||| |
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| T |
39953687 |
ccttattgaaattaactacttaattatccattggatttgaatttt |
39953731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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