View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19510_high_15 (Length: 417)

Name: NF19510_high_15
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19510_high_15
NF19510_high_15
[»] chr5 (12 HSPs)
chr5 (18-412)||(1162348-1162742)
chr5 (172-308)||(1850468-1850604)
chr5 (19-148)||(39400852-39400982)
chr5 (91-398)||(40412480-40412778)
chr5 (18-116)||(40419362-40419460)
chr5 (150-227)||(40419467-40419544)
chr5 (312-371)||(1850781-1850840)
chr5 (258-398)||(39880558-39880689)
chr5 (104-297)||(38988459-38988658)
chr5 (360-412)||(40419663-40419715)
chr5 (376-412)||(3300186-3300222)
chr5 (376-412)||(3393079-3393115)
[»] chr4 (2 HSPs)
chr4 (153-273)||(25911041-25911161)
chr4 (32-105)||(25911177-25911250)
[»] chr8 (1 HSPs)
chr8 (172-262)||(34401891-34401981)
[»] chr6 (1 HSPs)
chr6 (17-80)||(16727438-16727501)


Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Complemental strand, 1162742 - 1162348
Alignment:
Q  18 agaatcaaactcatggatcaaggtattgactactttttctgtagtcaacgtcatgctcaaaagcagtttgtgcattttataaaggaactagttcctggcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1162742 agaatcaaactcatggatcaaggtattgactactttttctgtagtcaacgtcatgctcaaaagcagtttgtgcattttataaaggaactagttcctggcc 1162643  T
Q  118 gcgaagaatctctttaagataagcaacttgtttttctcatgatacatttgtctgtcaattatgagattgctgaatttgctgattgcatttatacgacatt 217  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1162642 gcgaagaatctctttaagataaacaacttgtttttctcatgatacatttgtctgtcaattatgagattgctgaatttgctgattgcatttatacgacatt 1162543  T
Q  218 ttgagatgttcagttatatcattataggctactcaagttgttacaacacgagcttgaaaattattgtctcaaaccccttctcaatctctctatgcaatcc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1162542 ttgagatgttcagttatatcattataggctactcaagttgttacaacacgagcttgaaaattattgtctcaaaccccttctcaatctctctatacaatcc 1162443  T
Q  318 tgtctcaaagccttagggatgcagattttgcagcaaaactggctggtttatacaactcttgcaatcaaacatggctagttttacttcttctcact 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1162442 tgtctcaaagccttagggatgcagattttgcagcaaaactggctggtttatacaactcttgcaatcaaacatggctagttttacttcttttcact 1162348  T

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Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 172 - 308
Target Start/End: Original strand, 1850468 - 1850604
Alignment:
Q  172 tcaattatgagattgctgaatttgctgattgcatttatacgacattttgagatgttcagttatatcattataggctactcaagttgttacaacacgagct 271  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1850468 tcaattatgagattgctgaatttgctgattgcatttagatgacattttgagatgttcagttatatcattataggctactcaagttgttacaacacgagct 1850567  T
Q  272 tgaaaattattgtctcaaaccccttctcaatctctct 308  Q
    |||||||||||||||||||||||||| ||||||||||    
T  1850568 tgaaaattattgtctcaaaccccttcgcaatctctct 1850604  T

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Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 39400852 - 39400982
Alignment:
Q  19 gaatcaaactcatggatcaaggtattgactactttt-tctgtagtcaacgtcatgctcaaaagcagtttgtgcattttataaaggaactagttcctggcc 117  Q
    |||||||||  | |||| ||||||||||||  |||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||     
T  39400852 gaatcaaaccgacggattaaggtattgactttttttttctgtagtcaaagtcatgctcaaaagtagtttgtgtattttataaaggaactagttcctggct 39400951  T
Q  118 gcgaagaatctctttaagataagcaacttgt 148  Q
    || |||||||| |||||||||| ||||||||    
T  39400952 gcaaagaatctttttaagataaccaacttgt 39400982  T

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Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 91 - 398
Target Start/End: Original strand, 40412480 - 40412778
Alignment:
Q  91 attttataaaggaactagttcctggccgcgaagaatctcttt--aagataagcaacttg-tttttctcatgatacatttgtctgtcaattatgagattgc 187  Q
    ||||||||||||||||||||||||||  | ||||||||||||  ||||||||||||||| |||||||  |||||||||||||  ||||||||||||        
T  40412480 attttataaaggaactagttcctggctactaagaatctctttaaaagataagcaacttgttttttcttgtgatacatttgtccatcaattatgaga---- 40412575  T
Q  188 tgaatttgctgattgcatttatacgacattttgagatgttcagtt------atatcattataggctactcaagttg-------ttacaacacgagcttga 274  Q
         ||||||||| || ||||| || ||| |||| |||||||||      |||||||||||||||| | ||||||       |||||||| ||||||||    
T  40412576 -----ttgctgattacaattatatgatattctgaggtgttcagttatatcaatatcattataggctattgaagttgttgcaacttacaacatgagcttga 40412670  T
Q  275 aaattattgtctcaaaccccttctcaatctctctatgcaatcctgtctcaaagccttagggatgcagattttgcagcaaaactggctggtttatacaact 374  Q
    |||||||||||| ||||||| |||||     | ||   ||     ||||||||||||||||||| ||||||||||||||||    |||||||||||||||    
T  40412671 aaattattgtcttaaacccc-tctca---ggttta---aa-----tctcaaagccttagggatgtagattttgcagcaaaa----ctggtttatacaact 40412754  T

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Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 40419362 - 40419460
Alignment:
Q  18 agaatcaaactcatggatcaaggtattgactactttttctgtagtcaacgtcatgctcaaaagcagtttgtgcattttataaaggaactagttcctggc 116  Q
    ||||||||||  | ||||||||||||||||| ||||||||||||| || |||||||||||||| |||||||||||| ||||||||||||||||| ||||    
T  40419362 agaatcaaacggacggatcaaggtattgacttctttttctgtagttaaagtcatgctcaaaagtagtttgtgcattgtataaaggaactagttcttggc 40419460  T

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Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 40419467 - 40419544
Alignment:
Q  150 tttctcatgatacatttgtctgtcaattatgagattgctgaatttgctgattgcatttatacgacattttgagatgtt 227  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  40419467 tttctcatgatacatttgtccatcaattatgagattgctgaatttgctgattgcaattatacgacattttgaggtgtt 40419544  T

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Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 1850781 - 1850840
Alignment:
Q  312 caatcctgtctcaaagccttagggatgcagattttgcagcaaaactggctggtttataca 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1850781 caatcctgtctcaaagccttagggatgcagattttgcagcaaaactggctggtttataca 1850840  T

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Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 258 - 398
Target Start/End: Original strand, 39880558 - 39880689
Alignment:
Q  258 ttacaacacgagcttgaaaattattgtctcaaaccccttctcaatctctctatgcaatcctgtctcaaagccttagggatgcagattttgcagcaaaact 357  Q
    |||||||| |||||||||||||||||||| |||||||||| |||||||    |  ||||     ||||||||||||||||| ||||||||||||||||      
T  39880558 ttacaacatgagcttgaaaattattgtcttaaaccccttcacaatctcaggtttaaatc-----tcaaagccttagggatgtagattttgcagcaaaa-- 39880650  T
Q  358 ggctggtttatacaactcttgcaatcaaacatggctagttt 398  Q
      ||||||||||||||||||||| |||||||||||||||||    
T  39880651 --ctggtttatacaactcttgcattcaaacatggctagttt 39880689  T

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Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 104 - 297
Target Start/End: Original strand, 38988459 - 38988658
Alignment:
Q  104 actagttcctggccgcgaagaatctctttaa--gataagcaacttgtttttctcatgatacatttgtctgtcaattatgagattgctgaatttgctgatt 201  Q
    |||||||||||||  ||||||||||||||||  ||||||||||||||||||||  |||||||||||||  ||||||||||||          ||||||||    
T  38988459 actagttcctggctacgaagaatctctttaaaagataagcaacttgtttttcttgtgatacatttgtccatcaattatgaga---------atgctgatt 38988549  T
Q  202 gcatttatacgacattttgagatgttcagtt------atatcattataggctactcaagttg-------ttacaacacgagcttgaaaattattgtctca 288  Q
    ||| ||||| |||||| |||| |||||||||      |||||||||||||||| | ||||||       |||||||| ||||||||| |||||||||| |    
T  38988550 gcaattatatgacattatgaggtgttcagttatatcaatatcattataggctattgaagttgttacaacttacaacatgagcttgaacattattgtctta 38988649  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 412
Target Start/End: Original strand, 40419663 - 40419715
Alignment:
Q  360 ctggtttatacaactcttgcaatcaaacatggctagttttacttcttctcact 412  Q
    |||||||||| |||||||||| ||||| ||||||||||||||||||| |||||    
T  40419663 ctggtttatataactcttgcactcaaatatggctagttttacttcttttcact 40419715  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 412
Target Start/End: Original strand, 3300186 - 3300222
Alignment:
Q  376 ttgcaatcaaacatggctagttttacttcttctcact 412  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  3300186 ttgcactcaaacatggctagttttacttcttttcact 3300222  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 412
Target Start/End: Original strand, 3393079 - 3393115
Alignment:
Q  376 ttgcaatcaaacatggctagttttacttcttctcact 412  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  3393079 ttgcactcaaacatggctagttttacttcttttcact 3393115  T

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Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 153 - 273
Target Start/End: Complemental strand, 25911161 - 25911041
Alignment:
Q  153 ctcatgatacatttgtctgtcaattatgagattgctgaatttgctgattgcatttatacgacattttgagatgttcagttatatcattataggctactca 252  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||| ||||||||||||| |    
T  25911161 ctcatgatacatttgtccatcaattatgagattgctgaatttgctgattgcaattatatgatattttgaggtgttcagttatattattataggctactga 25911062  T
Q  253 agttgttacaacacgagcttg 273  Q
    |||||||||| || |||||||    
T  25911061 agttgttacaccatgagcttg 25911041  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 25911250 - 25911177
Alignment:
Q  32 ggatcaaggtattgactactttttctgtagtcaacgtcatgctcaaaagcagtttgtgcattttataaaggaac 105  Q
    |||||||||| |||||| ||||||||||||  || |||||||||||||| | ||||||||||||||||||||||    
T  25911250 ggatcaaggttttgacttctttttctgtagataaagtcatgctcaaaagtaatttgtgcattttataaaggaac 25911177  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 172 - 262
Target Start/End: Original strand, 34401891 - 34401981
Alignment:
Q  172 tcaattatgagattgctgaatttgctgattgcatttatacgacattttgagatgttcagttatatcattataggctactcaagttgttaca 262  Q
    ||||||||||||| | |||| ||||||||| || ||||| |||||||||||  |||||||||||| ||||||||||||| |||||||||||    
T  34401891 tcaattatgagatgggtgaaattgctgatttcaattatatgacattttgaggagttcagttatattattataggctactgaagttgttaca 34401981  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 16727501 - 16727438
Alignment:
Q  17 aagaatcaaactcatggatcaaggtattgactactttttctgtagtcaacgtcatgctcaaaag 80  Q
    |||||||||||  | ||||||||||||||||| ||||||||||| | || |||||| |||||||    
T  16727501 aagaatcaaacatacggatcaaggtattgacttctttttctgtacttaaagtcatggtcaaaag 16727438  T

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