View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19510_high_19 (Length: 379)
Name: NF19510_high_19
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19510_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 40271461 - 40271824
Alignment:
| Q |
1 |
tattgcaatctgtttttagaattcaaaatttctattataatatcatatggtctgagtgtaatgcatctaatattttagaaacagaaatagtaaagttcag |
100 |
Q |
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| T |
40271461 |
tattgcaatctgtttttagaattcaaaatttctattataatatcatatggtctgagtgtaatgcatctaattttttagaaacagaaatagtaaagttcag |
40271560 |
T |
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| Q |
101 |
agtttaagtacacataatgtgaagttgattttatttaagcatatcaaatgatcaaatcgacaagaagcttttcctatctaaaatttacaccacgtgtata |
200 |
Q |
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| T |
40271561 |
agtttaagtacacataatgtgaagttgattttatttaagcatatcaaatgatcaaatcgacaagaagcttttcctatctaaaatttacaccacgtgtata |
40271660 |
T |
|
| Q |
201 |
aatcacagcaatacatgcatgtttaatgaaattattgttccagcaagtaacctattatatcttgcaatcttgcaccataaggaatctactttgcaacact |
300 |
Q |
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| T |
40271661 |
aatcacagcaatacatgcatgtttaatgaaattattgttccagcaagtaacctattatatcttgcaatcttgcaccataaggaatctactttgcaacact |
40271760 |
T |
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| Q |
301 |
tcaaatgccaattataatgaaattatgtactatatagtataaaagtaattcagtgcttcaaact |
364 |
Q |
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| T |
40271761 |
tcaaatgccaattataatgaaattatgtactatatagtataaaactaactcagtgcttcaaact |
40271824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 40284205 - 40284252
Alignment:
| Q |
217 |
gcatgtttaatgaaattattgttccagcaagtaacctattatatcttg |
264 |
Q |
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| T |
40284205 |
gcatgtttaatgaaattattgttccaataagtaacctgttatatcttg |
40284252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 266
Target Start/End: Original strand, 40256844 - 40256891
Alignment:
| Q |
219 |
atgtttaatgaaattattgttccagcaagtaacctattatatcttgca |
266 |
Q |
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| T |
40256844 |
atgtttattgaaattattgttccagccagtaacctggtatatcttgca |
40256891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 40284061 - 40284177
Alignment:
| Q |
54 |
gagtgtaatgcatctaatattttagaaacagaaatagtaaagttcagagtttaagtacacataatgtgaagttgattttatttaagcatatcaaatgatc |
153 |
Q |
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| T |
40284061 |
gagtgtaatccatttcattttttagaaatagaaatggttaagattaaagtttgagtactcataatg--aagttaattttacttaagtgtatcaaatgaca |
40284158 |
T |
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| Q |
154 |
aaatcgacaagaagctttt |
172 |
Q |
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| T |
40284159 |
aaatctacaagaagctttt |
40284177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 40265541 - 40265593
Alignment:
| Q |
137 |
aagcatatcaaatgatcaaatcgacaagaagcttttcctatctaaaatttacacca |
192 |
Q |
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|||| ||||||||||||||||| |||||| |||| ||||||||||||||||||| |
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| T |
40265541 |
aagcctatcaaatgatcaaatctacaaga---tttttctatctaaaatttacacca |
40265593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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