View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19510_high_2 (Length: 800)

Name: NF19510_high_2
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19510_high_2
NF19510_high_2
[»] chr4 (2 HSPs)
chr4 (29-569)||(4674060-4674589)
chr4 (567-783)||(4674646-4674861)
[»] chr1 (2 HSPs)
chr1 (159-251)||(28724708-28724800)
chr1 (190-223)||(19238840-19238873)
[»] chr3 (4 HSPs)
chr3 (174-286)||(1642657-1642769)
chr3 (161-261)||(22288273-22288373)
chr3 (183-286)||(27763781-27763884)
chr3 (155-227)||(22288553-22288625)
[»] chr7 (2 HSPs)
chr7 (161-262)||(45778902-45779003)
chr7 (191-274)||(23933641-23933724)
[»] chr5 (2 HSPs)
chr5 (179-286)||(10591983-10592090)
chr5 (190-261)||(29553606-29553677)
[»] chr6 (1 HSPs)
chr6 (179-227)||(28099299-28099347)
[»] chr8 (1 HSPs)
chr8 (128-209)||(27121805-27121886)


Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 29 - 569
Target Start/End: Original strand, 4674060 - 4674589
Alignment:
Q  29 tgtggctcatagattatatgcagaattgttaatatctaattccatttttgtgtgattaattatgtattatctagcaaagaagcgtttggatgggat-gat 127  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||| |||    
T  4674060 tgtggttcatagattatatgcagaattgttaatatctaattccatttttgtgtgattaattatgtattatctagcaaa--agcgtttggatgtgattgat 4674157  T
Q  128 acgggttttttctagtttaaccaatgatttagattcgaattcagttttgaacatgcaacggtgttaaaacttttaggaagagtttgtcgtccatttgagt 227  Q
         |||||| |||||||||||||||||| | |||||||| ||||||| |||||||| |||||||||| |||||| ||||||||||||||||||| | |    
T  4674158 -----ttttttttagtttaaccaatgatttgggttcgaatttagttttggacatgcaatggtgttaaaatttttagaaagagtttgtcgtccatttaaat 4674252  T
Q  228 cctgcaatacttaagggattagtcactgcagttgcatgcagaggatatcagatttacactagaaaattatgtgttatcnnnnnnnnnnnnnctctaaaga 327  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||             |||||||||    
T  4674253 cctgcaatgcttaagggattaatcactgcagttgcatgcagaggatatcatatttacactagaaaattatgtgttatcttttttcctttttctctaaaga 4674352  T
Q  328 gtctaacagtcaactatgtgtagatataaatctgtttgnnnnnnnnnnnnngaggtgatattaaaaattatatattattatgaaatgcagggactattta 427  Q
    ||||||||||||||||||||||||||| ||||||||||             ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4674353 gtctaacagtcaactatgtgtagatattaatctgtttgttttttcgtttttgaggtgatattaaaaattatatatttttatgaaatgcagggactattta 4674452  T
Q  428 gtgtgtttctaccataccataatgaaaatctttttagagtgcttcagattctcttcaaagaaagtaacaaacagatgaaaactttaataagtggttatgt 527  Q
    |||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4674453 gtgtgtttctacc-----ataatgaaaatctttttagagtgcttcagattctcttcaaagaaagtaacaaacagatgaaaactttaataagtggttatgt 4674547  T
Q  528 ttgtacaaacaaaagttttttaagaaaaaatcttaacaaata 569  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4674548 ttgtacaaacaaaagttttttaagaaaaaatcttaacaaata 4674589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 567 - 783
Target Start/End: Original strand, 4674646 - 4674861
Alignment:
Q  567 atatttttaatatgcatttcttaagtcaacttgagtctcgaatgtatgtttctttagttagtttgtttatcaaatgtgtactttattagttaatttggta 666  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||    
T  4674646 atatttttaatatgcatttcttaagtcaactagagtctcgaatgtatgtttctttagttagtttatttattaaatgtgta-tttattagttaatttgcta 4674744  T
Q  667 tcggttacttgcaaaatgtgaactaannnnnnnaaaatactgatatacagatttacaggccaaaatgattccctttgcaaggaaaaatacttcattaagc 766  Q
    || |||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4674745 tcagttacttgcaaaatgtgaactaattttttgaaaatactgatatacagatttacaggccaaaatgattccctttgcaaggaaaaatacttcattaagc 4674844  T
Q  767 aacacgagaaacagaag 783  Q
    |||||||||||||||||    
T  4674845 aacacgagaaacagaag 4674861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 159 - 251
Target Start/End: Original strand, 28724708 - 28724800
Alignment:
Q  159 gattcgaattcagttttgaacatgcaacggtgttaaaacttttaggaagagtttgtcgtccatttgagtcctgcaatacttaagggattagtc 251  Q
    |||||||||||||  ||||||||||||| ||||||||||| ||||||||||| || |||||||||||||||| ||||  |  |||||||||||    
T  28724708 gattcgaattcagccttgaacatgcaacagtgttaaaactcttaggaagagtctgccgtccatttgagtcctacaatgttcgagggattagtc 28724800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 19238873 - 19238840
Alignment:
Q  190 gttaaaacttttaggaagagtttgtcgtccattt 223  Q
    ||||||||||||||| ||||||||||||||||||    
T  19238873 gttaaaacttttagggagagtttgtcgtccattt 19238840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 174 - 286
Target Start/End: Original strand, 1642657 - 1642769
Alignment:
Q  174 ttgaacatgcaacggtgttaaaacttttaggaagagtttgtcgtccatttgagtcctgcaatacttaagggattagtcactgcagttgcatgcagaggat 273  Q
    ||||||||||| | ||||||||||||||||| ||||| |  |||||||||| ||||  |||||||| ||||||||||  | ||||||||  || ||||||    
T  1642657 ttgaacatgcagccgtgttaaaacttttagggagagtctaccgtccatttgggtcccacaatacttgagggattagtttccgcagttgcgcgcggaggat 1642756  T
Q  274 atcagatttacac 286  Q
    ||| |||||||||    
T  1642757 atccgatttacac 1642769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 161 - 261
Target Start/End: Original strand, 22288273 - 22288373
Alignment:
Q  161 ttcgaattcagttttgaacatgcaacggtgttaaaacttttaggaagagtttgtcgtccatttgagtcctgcaatacttaagggattagtcactgcagtt 260  Q
    |||||||||||  |||||||||||||  |||||||||| ||||| |||  |||||||||||||||||    ||||||| |||| ||||||| ||||||||    
T  22288273 ttcgaattcagccttgaacatgcaacaatgttaaaactcttagggagaacttgtcgtccatttgagttacacaatactcaaggaattagtctctgcagtt 22288372  T
Q  261 g 261  Q
    |    
T  22288373 g 22288373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 183 - 286
Target Start/End: Original strand, 27763781 - 27763884
Alignment:
Q  183 caacggtgttaaaacttttaggaagagtttgtcgtccatttgagtcctgcaatacttaagggattagtcactgcagttgcatgcagaggatatcagattt 282  Q
    |||| ||||||||||| ||||| ||||| || |||||||||||||||  |||| ||  ||||||||||| | ||||||||  |||||||||||| | |||    
T  27763781 caacagtgttaaaactcttagggagagtctgccgtccatttgagtcccacaatgctcgagggattagtctccgcagttgcgcgcagaggatatccggttt 27763880  T
Q  283 acac 286  Q
    ||||    
T  27763881 acac 27763884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 22288553 - 22288625
Alignment:
Q  155 tttagattcgaattcagttttgaacatgcaacggtgttaaaacttttaggaagagtttgtcgtccatttgagt 227  Q
    ||||| ||||||||||| |||||||||||||| ||| ||||||| ||||  |||  ||||||| |||||||||    
T  22288553 tttaggttcgaattcagctttgaacatgcaacagtgctaaaactcttagtgagaacttgtcgtacatttgagt 22288625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 262
Target Start/End: Original strand, 45778902 - 45779003
Alignment:
Q  161 ttcgaattcagttttgaacatgcaacggtgttaaaacttttaggaagagtttgtcgtccatttgagtcctgcaatacttaagggattagtcactgcagtt 260  Q
    |||||||||||| ||| |||| ||||||||||||| |||||||| |  ||||||||||| ||||||||   |||||||  ||||||||||| | ||||||    
T  45778902 ttcgaattcagtcttggacatacaacggtgttaaagcttttagggattgtttgtcgtccgtttgagtctcacaatactcgagggattagtctccgcagtt 45779001  T
Q  261 gc 262  Q
    ||    
T  45779002 gc 45779003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 274
Target Start/End: Complemental strand, 23933724 - 23933641
Alignment:
Q  191 ttaaaacttttaggaagagtttgtcgtccatttgagtcctgcaatacttaagggattagtcactgcagttgcatgcagaggata 274  Q
    |||||||||||||| |||||||| || ||||||  || |  |||||||| ||||||||||| ||||| |||||  |||||||||    
T  23933724 ttaaaacttttagggagagtttgccgcccatttaggttcgacaatacttgagggattagtctctgcaattgcacacagaggata 23933641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 286
Target Start/End: Original strand, 10591983 - 10592090
Alignment:
Q  179 catgcaacggtgttaaaacttttaggaagagtttgtcgtccatttgagtcctgcaatacttaagggattagtcactgcagttgcatgcagaggatatcag 278  Q
    |||||| | ||||||||||| ||||| ||||| || || ||||||||||||  |||| ||  ||||||||||| ||||||||||  || ||||||| | |    
T  10591983 catgcagcagtgttaaaactcttagggagagtctgccgcccatttgagtcccacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccg 10592082  T
Q  279 atttacac 286  Q
    ||||||||    
T  10592083 atttacac 10592090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 261
Target Start/End: Original strand, 29553606 - 29553677
Alignment:
Q  190 gttaaaacttttaggaagagtttgtcgtccatttgagtcctgcaatacttaagggattagtcactgcagttg 261  Q
    ||||||||| ||||| ||||||||||||||||||| ||||   ||| || ||| |||||||| |||||||||    
T  29553606 gttaaaactcttagggagagtttgtcgtccatttgggtcccagaatgctcaagagattagtctctgcagttg 29553677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 28099299 - 28099347
Alignment:
Q  179 catgcaacggtgttaaaacttttaggaagagtttgtcgtccatttgagt 227  Q
    |||||| | ||||||||||||||||| ||| ||||||||||||||||||    
T  28099299 catgcagcagtgttaaaacttttagggagaatttgtcgtccatttgagt 28099347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 209
Target Start/End: Complemental strand, 27121886 - 27121805
Alignment:
Q  128 acgggttttttctagtttaaccaatgatttagattcgaattcagttttgaacatgcaacggtgttaaaacttttaggaagag 209  Q
    |||||| | |||||| |||||||| | | | | ||||||| ||| ||| | |||||||| ||||||||||||||||||||||    
T  27121886 acgggtctcttctagcttaaccaaagttctgggttcgaatccagctttaagcatgcaacagtgttaaaacttttaggaagag 27121805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University