View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19510_high_22 (Length: 332)
Name: NF19510_high_22
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19510_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 26 - 193
Target Start/End: Original strand, 44442543 - 44442710
Alignment:
| Q |
26 |
atccaaaaaagaaatatcttgtaaatttgaagcaattccccatagccaaaacttatggaacctatgcatatggtaataatgaaattagagtacctttatt |
125 |
Q |
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| T |
44442543 |
atccaaaaaagaaatatcttgtaaatttgaagcaattccccatagccaaaacttatggaacctatgcatatggtaataatgaaattagagtacctttatt |
44442642 |
T |
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| Q |
126 |
tgaaggatgataatgaagatatacaatagaaagtaataacatatactatattgcaatagattttgtag |
193 |
Q |
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| T |
44442643 |
tgaaggatgataatgaagatatacaatagaaagtaataacatatactatattgcaatagattttgtag |
44442710 |
T |
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Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 219 - 306
Target Start/End: Original strand, 44442733 - 44442824
Alignment:
| Q |
219 |
aaacattaatataagtaaaataatgcagtggatactcgacatgt----aaccaacggaagaatttgtgggtctattctaatagactttatat |
306 |
Q |
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| T |
44442733 |
aaacattaatataagtaaaataatgcagtggatactcgacatgtaaccaaccaacggaagaatttgtgggtctattctaatagactttatat |
44442824 |
T |
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