View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19510_high_28 (Length: 315)
Name: NF19510_high_28
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19510_high_28 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 5954588 - 5954289
Alignment:
| Q |
16 |
cgaacattggcttggaagtgataccgaagttgcagaccttttcaacaggttatgccaagaggttgtgtttgacatcaataacagttacctttctccatta |
115 |
Q |
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| T |
5954588 |
cgaacattggcttggaagtgataccgaagttgcagaccttttcaacaggttatgccaagaggttgtgtttgacatcaataacagttatctttctccatta |
5954489 |
T |
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| Q |
116 |
tcagagtctgttaatagatactacaatcatagatggaatacttggtgtgcaagcttgagacacaattacttcaataacccttgggctattatctctttgg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5954488 |
tcagagtctgttaatagatactacaatcatagatggaatacttggtgtgcaagcttgagacacaattacttcaataacccttgggctattatctctttgg |
5954389 |
T |
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| Q |
216 |
ttgctgctgtagtcttgttgctacttacttttgcacaaacctactacagtgtatatggatattatagaccatcacagtaactggttagtacaagtattgc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5954388 |
ttgctgctgtagtcttgttgctacttacttttgcacaaacctactacagtgtatatggatattatagaccagcacagtaactggttagtacaagtattgc |
5954289 |
T |
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