View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19510_high_29 (Length: 296)
Name: NF19510_high_29
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19510_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 43056295 - 43056028
Alignment:
| Q |
18 |
agttgaaactcactctgatgttggattggaagcaaggtggaaggaaatattaaaagttgtgcgttttcagtcacgactcttagggcagcttcggcgtgaa |
117 |
Q |
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| T |
43056295 |
agttgaaactcactctgatgttggattggaagcaaggtggaaggaaatattaaaagttgtgcgttttcagtcacgactcttagggcagcttcggcgtgaa |
43056196 |
T |
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| Q |
118 |
tgacttcaacaatcaggttgtctaaggcatccatagatggtctgtagaggaaatattatctcgatatatcagatttnnnnnnnnnnnnnnnnnnnncaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43056195 |
tgacttcaacaatcaggttgtctaaggcatccatagatggtctgtagaggaaatattatctcgatatatcagatttaaaaaataaaaatacaaaaacaat |
43056096 |
T |
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| Q |
218 |
gacatgatgtaaaacatgtatgagaattacccttcatactcgggaaataaataaagagcaatattctt |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43056095 |
gacatgatgtaaaacatgtatgagaattacccttcatactcgggaaataaataaagagcaatattctt |
43056028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 174
Target Start/End: Complemental strand, 44806126 - 44805973
Alignment:
| Q |
21 |
tgaaactcactctgatgttggattggaagcaaggtggaaggaaatattaaaagttgtgcgttttcagtcacgactcttagggcagcttcggcgtgaatga |
120 |
Q |
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|||| ||||||||||||| |||||||||||||| |||||||| |||||||| ||| |||||||| || ||||||| ||||||||| | | ||||| |
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| T |
44806126 |
tgaagctcactctgatgtcggattggaagcaagtcagaaggaaaaattaaaagcactgcattttcagttacaactcttacggcagcttcagtgcaaatga |
44806027 |
T |
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| Q |
121 |
cttcaacaatcaggttgtctaaggcatccatagatggtctgtagaggaaatatt |
174 |
Q |
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||| ||| ||| ||||| ||||| | |||||| ||| ||||||||||||| |
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| T |
44806026 |
tatcatcaaccagcttgtcaaaggcctttatagataatctatagaggaaatatt |
44805973 |
T |
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