View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19510_high_37 (Length: 258)
Name: NF19510_high_37
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19510_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 7013083 - 7013324
Alignment:
| Q |
1 |
gctagcaaaagacacaagcttactagtccgttaccaaaggaacaaaatggcttgcgattttgcaaacttaacagctagcaagtacggcggtaaccagctt |
100 |
Q |
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| T |
7013083 |
gctagcaaaagacacaagcttactagtccgttaccaaaggaacaaaatggcttgcgattttgcaaacttaacagctagcaagtacggcggtaaccagctt |
7013182 |
T |
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| Q |
101 |
tgggctggttccgccgcggctgttacaccaagcaaagcggtggaggagtgggtgaaggagaaagagttttacattcatgtgaataatacttgtgtggtga |
200 |
Q |
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| T |
7013183 |
tgggctggttccgccgcggctgttacaccaagcaaagcggtggaggagtgggtgaaggagaaagagttttacattcatgtgaataatacttgtgtggtga |
7013282 |
T |
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| Q |
201 |
atcatgaatgtggtgtttatacacaggttgtgtggaagaaat |
242 |
Q |
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| T |
7013283 |
atcatgaatgtggtgtttatacacaggttgtgtggaagaaat |
7013324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 7006700 - 7006802
Alignment:
| Q |
2 |
ctagcaaaagacacaagcttactagtccgttaccaaaggaacaaaatggcttgcgattttgcaaacttaacagctagcaagtacggcggtaaccagcttt |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | || ||| |||||||||| || ||||||||||||||||||| |
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| T |
7006700 |
ctagcaaaagacacaagcttactagtccgttaccaaaggaacaaaatggcttgtggtctcgccaacctaacagctagtaaatacggcggtaaccagcttt |
7006799 |
T |
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| Q |
102 |
ggg |
104 |
Q |
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||| |
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| T |
7006800 |
ggg |
7006802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 7006846 - 7006894
Alignment:
| Q |
148 |
gtgggtgaaggagaaagagttttacattcatgtgaataatacttgtgtg |
196 |
Q |
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| T |
7006846 |
gtgggtgaggaagaaagagctttacattcatgtgaatgatacttgtgtg |
7006894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 33556516 - 33556423
Alignment:
| Q |
143 |
gaggagtgggtgaaggagaaagagttttacattcat-gtgaataatacttgtgtggtgaatcatgaatgtggtgtttatacacaggttgtgtgga |
236 |
Q |
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| T |
33556516 |
gaggaatgggtgaaggagaaggagttttataatcatagtga-taatacatgtgttgtgaatcataggtgtggtgtttatactcaagttgtttgga |
33556423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7694911 - 7694870
Alignment:
| Q |
1 |
gctagcaaaagacacaagcttactagtccgttaccaaaggaa |
42 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||| |
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| T |
7694911 |
gctagcaaaagacacatgcttactagtcaattaccaaaggaa |
7694870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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