View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19510_high_39 (Length: 244)

Name: NF19510_high_39
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19510_high_39
NF19510_high_39
[»] chr2 (4 HSPs)
chr2 (1-218)||(40205021-40205250)
chr2 (119-185)||(43542979-43543045)
chr2 (137-205)||(16408363-16408431)
chr2 (115-185)||(30435239-30435309)
[»] chr8 (4 HSPs)
chr8 (133-184)||(34181578-34181629)
chr8 (132-184)||(16967529-16967581)
chr8 (96-185)||(15171189-15171278)
chr8 (96-144)||(6615712-6615760)
[»] chr7 (1 HSPs)
chr7 (96-147)||(19058938-19058989)
[»] chr5 (1 HSPs)
chr5 (96-185)||(35154166-35154255)
[»] scaffold0470 (1 HSPs)
scaffold0470 (96-144)||(4998-5046)
[»] chr3 (1 HSPs)
chr3 (126-185)||(27151656-27151716)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 40205021 - 40205250
Alignment:
Q  1 tattttgttgccagttttgatatttgttggattaaccttttgttttagggaatgagatttgaatgatactattctagtttttattacacgagaa------ 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  40205021 tattttgttgccagttttgatatttgttggattaaccttttgttttagggaatgagatttgaatgatactattctagtttttattacacgagaaaattca 40205120  T
Q  95 ------aattcatttaataaacaatatatttagtttatattaagaactaaatacatcatgtattgaatgaattagaaaaatgaattttctcttataaccg 188  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||       
T  40205121 ttttttaattcatttaataaacaatatatttagtttatattaagaactaaatacattatatattgaatgaattagaaaaataaattttctcttataataa 40205220  T
Q  189 agacaagaggaagtatctctttctcttgat 218  Q
    |||||||||| ||||||||| |||||||||    
T  40205221 agacaagaggcagtatctctatctcttgat 40205250  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 185
Target Start/End: Original strand, 43542979 - 43543045
Alignment:
Q  119 tagtttatattaagaactaaatacatcatgtattgaatgaattagaaaaatgaattttctcttataa 185  Q
    ||||||||||||||||| | ||||||||| |||||||||||    ||||||||| ||||||||||||    
T  43542979 tagtttatattaagaacgagatacatcatttattgaatgaacctaaaaaatgaactttctcttataa 43543045  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 16408431 - 16408363
Alignment:
Q  137 aaatacatcatgtattgaatgaattagaaaaatgaattttctcttataaccgagacaagaggaagtatc 205  Q
    ||||||||||| |||| |||||| | ||||||||||| || |||||||  |||||| ||||||||||||    
T  16408431 aaatacatcatttattcaatgaacttgaaaaatgaatattttcttatattcgagaccagaggaagtatc 16408363  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 30435309 - 30435239
Alignment:
Q  115 tatttagtttatattaagaactaaatacatcatgtattgaatgaattagaaaaatgaattttctcttataa 185  Q
    |||||| ||||||||| | |||||||||||||| |||||||| |||   ||||||||| ||| ||||||||    
T  30435309 tatttaatttatattagggactaaatacatcatttattgaataaatctaaaaaatgaactttatcttataa 30435239  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 34181578 - 34181629
Alignment:
Q  133 aactaaatacatcatgtattgaatgaattagaaaaatgaattttctcttata 184  Q
    ||||||||||||||| |||| |||||||| ||||||||||| ||||||||||    
T  34181578 aactaaatacatcatttattcaatgaatttgaaaaatgaatcttctcttata 34181629  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 16967529 - 16967581
Alignment:
Q  132 gaactaaatacatcatgtattgaatgaattagaaaaatgaattttctcttata 184  Q
    |||||||||||||||| |||| |||||||| |||||| |||| ||||||||||    
T  16967529 gaactaaatacatcatttattcaatgaatttgaaaaaagaatcttctcttata 16967581  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 15171189 - 15171278
Alignment:
Q  96 attcatttaataaacaatatatttagtttatattaagaactaaatacatcatgtattgaatgaattagaaaaatgaattttctcttataa 185  Q
    |||||||||||||| | | |||||||| |||||||| ||  ||||| ||||| |||| ||  ||||| |||||| |||||| ||||||||    
T  15171189 attcatttaataaatagtgtatttagtctatattaaaaataaaatatatcatttattaaaaaaattaaaaaaataaattttatcttataa 15171278  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 6615760 - 6615712
Alignment:
Q  96 attcatttaataaacaatatatttagtttatattaagaactaaatacat 144  Q
    ||||||| ||||||  ||| ||||||| |||||||||||||||||||||    
T  6615760 attcattcaataaatgatacatttagtctatattaagaactaaatacat 6615712  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 19058938 - 19058989
Alignment:
Q  96 attcatttaataaacaatatatttagtttatattaagaactaaatacatcat 147  Q
    ||||||| ||||||  ||| ||||||| ||||||||||||||||||||||||    
T  19058938 attcattcaataaatgatacatttagtctatattaagaactaaatacatcat 19058989  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 35154166 - 35154255
Alignment:
Q  96 attcatttaataaacaatatatttagtttatattaagaactaaatacatcatgtattgaatgaattagaaaaatgaattttctcttataa 185  Q
    ||||||||||||||   | ||||| || |||||||  ||||| |||||| || | ||||||||| |  ||||||||||||||||||||||    
T  35154166 attcatttaataaatggtgtatttggtctatattagaaactagatacattatttgttgaatgaacttaaaaaatgaattttctcttataa 35154255  T

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Target: scaffold0470 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 5046 - 4998
Alignment:
Q  96 attcatttaataaacaatatatttagtttatattaagaactaaatacat 144  Q
    ||||||| ||||||  ||| ||||||| |||||||||||||||||||||    
T  5046 attcattcaataaatgatacatttagtctatattaagaactaaatacat 4998  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 27151656 - 27151716
Alignment:
Q  126 tattaagaactaaatacatcatgtattgaatga-attagaaaaatgaattttctcttataa 185  Q
    |||||||||||| |||||| || ||||||||||  ||| ||||||||||| ||||||||||    
T  27151656 tattaagaactagatacataatttattgaatgagtttaaaaaaatgaattatctcttataa 27151716  T

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