View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19510_high_40 (Length: 242)

Name: NF19510_high_40
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19510_high_40
NF19510_high_40
[»] chr1 (9 HSPs)
chr1 (18-242)||(27443412-27443636)
chr1 (18-177)||(27207894-27208053)
chr1 (18-177)||(27432974-27433133)
chr1 (18-189)||(27215265-27215436)
chr1 (18-189)||(27221227-27221398)
chr1 (47-177)||(27389217-27389347)
chr1 (81-173)||(27455186-27455277)
chr1 (57-177)||(27410183-27410303)
chr1 (110-168)||(27415763-27415821)


Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 27443636 - 27443412
Alignment:
Q  18 accatggtgatggaagatccaccgcaattgttgctccaggtcctaactcaaaacccgttgtcgatagctgaggtttttggtctccagttaacgttcctgg 117  Q
    |||||||||||||||| ||||| | ||| ||  |||||| ||| ||||| ||||| || || ||||||||||||||||||||||| ||||||||||||||    
T  27443636 accatggtgatggaaggtccactgaaatagtaactccagatcccaactcgaaacctgtcgttgatagctgaggtttttggtctccggttaacgttcctgg 27443537  T
Q  118 ccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaacaactgcataaagaaatacaaaatcactcatattagaattataaatgaat 217  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27443536 ccatacagtgtattcacacctatttgtgaacgtcaccttagctcctccaacaactgcataaagaaatacaaaatcactcatattagaattataaatgaat 27443437  T
Q  218 ttattaagcgcaagaagaaaaattt 242  Q
    |||||||||||||||||||||||||    
T  27443436 ttattaagcgcaagaagaaaaattt 27443412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 27207894 - 27208053
Alignment:
Q  18 accatggtgatggaagatccaccgcaattgttgctccaggtcctaactcaaaacccgttgtcgatagctgaggtttttggtctccagttaacgttcctgg 117  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27207894 accatggtgatggaaggtccaccgcaattgttgctccaggtcctaactcaaaacccgttgtcgatagctgaggtttttggtctccagttaacgttcctgg 27207993  T
Q  118 ccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaacaactgcata 177  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  27207994 ccatacagtgtatgcacacctatttgtgaatgtcaccttagctcctccaaccactgcata 27208053  T

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Target: chr1; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 27432974 - 27433133
Alignment:
Q  18 accatggtgatggaagatccaccgcaattgttgctccaggtcctaactcaaaacccgttgtcgatagctgaggtttttggtctccagttaacgttcctgg 117  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||    
T  27432974 accatggtgatggaaggtccacctcaattgttgctccaggtcctaactcaaaacccgttgttgatagctgaggcttttggtctccagttaacgttcccgg 27433073  T
Q  118 ccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaacaactgcata 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  27433074 ccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccgctgcata 27433133  T

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Target: chr1; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 27215265 - 27215436
Alignment:
Q  18 accatggtgatggaagatccaccgcaattgttgctccaggtcctaactcaaaacccgttgtcgatagctgaggtttttggtctccagttaacgttcctgg 117  Q
    |||||||||||||||| ||||| | ||| ||  |||||| ||| ||||| ||||| || || ||||||||||||||||||||||| ||||||||||||||    
T  27215265 accatggtgatggaaggtccactgaaatagtaactccagatcccaactcgaaacctgtcgttgatagctgaggtttttggtctccggttaacgttcctgg 27215364  T
Q  118 ccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaacaactgcataaagaaatacaaa 189  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| | |||||||||    
T  27215365 ccatacagtgtattcacacctatttgtgaacgtcaccttagctcctccaaccactgcatatacaaatacaaa 27215436  T

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Target: chr1; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 27221227 - 27221398
Alignment:
Q  18 accatggtgatggaagatccaccgcaattgttgctccaggtcctaactcaaaacccgttgtcgatagctgaggtttttggtctccagttaacgttcctgg 117  Q
    |||||||||||||||| ||||| | ||| ||  |||||| ||| ||||| ||||| || || ||||||||||||||||||||||| ||||||||||||||    
T  27221227 accatggtgatggaaggtccactgaaatagtaactccagatcccaactcgaaacctgtcgttgatagctgaggtttttggtctccggttaacgttcctgg 27221326  T
Q  118 ccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaacaactgcataaagaaatacaaa 189  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| | |||||||||    
T  27221327 ccatacagtgtattcacacctatttgtgaaagtcaccttagctcctccaaccactgcatatacaaatacaaa 27221398  T

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Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 47 - 177
Target Start/End: Original strand, 27389217 - 27389347
Alignment:
Q  47 gttgctccaggtcctaactcaaaacccgttgtcgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtga 146  Q
    |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||||| ||||    
T  27389217 gttgctccaggtcctaactcgaaacctgttgttgatagctgaggtttttggtctccggttaaggttcctggccatacggtgtatccacatctattcgtga 27389316  T
Q  147 atgtcaccttagctcctccaacaactgcata 177  Q
    |||| ||| | ||||||| | || |||||||    
T  27389317 atgttaccgtggctcctctagcagctgcata 27389347  T

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Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 81 - 173
Target Start/End: Original strand, 27455186 - 27455277
Alignment:
Q  81 atagctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaacaactg 173  Q
    |||||||||||||||| |||| |||||||||| || | |||||| | ||||||||| |||| |||||||||||||||||||||||||| ||||    
T  27455186 atagctgaggtttttg-tctctagttaacgtttctagtcatacaatttattcacacttattggtgaatgtcaccttagctcctccaactactg 27455277  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 177
Target Start/End: Original strand, 27410183 - 27410303
Alignment:
Q  57 gtcctaactcaaaacccgttgtcgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcacctt 156  Q
    |||| ||||||||||| ||||| ||||  |||||  ||||  ||  ||| || ||||||||||||||||| ||| |||| ||||| ||||||||||||||    
T  27410183 gtcccaactcaaaacctgttgttgataattgaggggtttgagctgtagtaaaggttcctggccatacagtatatccacatctattcgtgaatgtcacctt 27410282  T
Q  157 agctcctccaacaactgcata 177  Q
     ||||||||||| ||||||||    
T  27410283 ggctcctccaaccactgcata 27410303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 27415821 - 27415763
Alignment:
Q  110 gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaac 168  Q
    ||||||||||||||||||||| |||| ||||| |||||||||||||| |||||||||||    
T  27415821 gttcctggccatacagtgtatacacatctattcgtgaatgtcaccttggctcctccaac 27415763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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