View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19510_high_6 (Length: 557)
Name: NF19510_high_6
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19510_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 18 - 546
Target Start/End: Original strand, 38378174 - 38378703
Alignment:
| Q |
18 |
attaggccattaggcctggcaggtattaaaaacggtcaaactacagcaaaagcagtctagaatcaactctaacgaaaaattaggaaactcaggcaaacac |
117 |
Q |
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| T |
38378174 |
attaggccattaggcctagcaggtattacaaacggtcaaactacaacaaaagcggtctagaatcaactctaacgaaaaattaggaaactctagcaaacac |
38378273 |
T |
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| Q |
118 |
ccacctaacacaagcaaaatctagcgaacatgcatatgagtgcgaaactagattgcaaaaaagtgtggtgaaagaacgttcgcaagcacaaaatcaagaa |
217 |
Q |
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| T |
38378274 |
ccacctaacacaagcaaaatctagcgaacatgtatatgagtgcgaaattagattgcaaaaaagtgtggtgtaagaacgttcgcaagcacaaaaccaagaa |
38378373 |
T |
|
| Q |
218 |
tgagtccaaacgaactcaaattcaaatttaaaacccgacaagtgaacctggccgtcaacatgaaacaaaaccacaagaagaaataatggtcattttgagc |
317 |
Q |
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| T |
38378374 |
tgagtccaaacgaactcaaattcaaatttaaaacccgacaagtgaacctggccgtcaacatgaaacaaaaccacaagaagaaataatggtcattttgagc |
38378473 |
T |
|
| Q |
318 |
caaacaattcgaaattcaaccaacctttaaaggatcttaaa-acaacctaagagtgttggaccatatcttgtggatcacaagaccaaaaccaccacacat |
416 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38378474 |
caaacaatccgaaattcaaccaacctttaaaggatcttaaacacaacctatgagtgttggaccatatcttgtggatcacaagatcaaaaccaccacacat |
38378573 |
T |
|
| Q |
417 |
gattctaaaacccataatcacatcacatgatctcaaatcttgaagtggaaagacaaaattgtaactcaaattgaatataatgagctagggatcaaacaca |
516 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38378574 |
gattctcaaacccataatcacatcacatgatctcaaatcttgaagtggaaagacaaaattgtaactcaaattgaatacaatgagctagggatcaaacaca |
38378673 |
T |
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| Q |
517 |
tcaaaaaccaagaaacccatacacgattca |
546 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
38378674 |
tcaaaaaccaagaaacccatacacgattca |
38378703 |
T |
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