View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19510_high_8 (Length: 506)
Name: NF19510_high_8
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19510_high_8 |
 | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0002 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 231 - 491
Target Start/End: Original strand, 5204 - 5464
Alignment:
| Q |
231 |
agctctaattctttgaaggccatgccaaatccacaccaagtcaaagagggcatcaatgttagtaatggtaacaaattgttggaaaggaactcataagtag |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5204 |
agctctaattctttgaaggccatgccaaatccacaccaagtcaaagagggcatcaatgttagtaatggtaacaaattgttggaaaggaactcataagcag |
5303 |
T |
|
| Q |
331 |
atttaatagagaaagttccattgttagataaaaccctcaacttgagaagtgatgagtgctattatgtggactaaggaggacgaatgtaagcacatgatct |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5304 |
atttaatagagaaagttccattgttagataaaaccctcaacttgagaagtgatgagtgctattatgtggactaaggaggacgaatgtaagcacataatct |
5403 |
T |
|
| Q |
431 |
ttgaggtttacgattccaccaacccgttggtcttgccaaaagcgaatggtatgatcatcat |
491 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5404 |
ttgaggtttacgattccaccaacccattggtcttgccaaaaacgaatggtatgatcatcat |
5464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 3780 - 4000
Alignment:
| Q |
13 |
aatatccgttgtagtgagattcgaatgaagccgatgataaagaccaaaaactgaaaaatcttgccaagtgtatgtttctcatcaatgaaaggattctaaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3780 |
aatatccgttgtagtgagattcgaatgaagccgatgataaagaccaaaaactgaaaaatcttgccaagtgt----ttctcatcaatgaaaggattctaaa |
3875 |
T |
|
| Q |
113 |
aatccctaatcggctcacagta-ataaagaagatgcatgattgtttcgtcttgatccccatagtgaatgcaagatgcatcattagtaagaagacatctat |
211 |
Q |
| |
|
||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | || |
|
|
| T |
3876 |
aatccctaatcggctcatagtatacaaagaagatgcatgattgtttcgtcttgatccccacagtgaatgcaagatgcatcattagtaagaagacgaccat |
3975 |
T |
|
| Q |
212 |
gacataatttccaaagatgagctct |
236 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
3976 |
gacataatttccaaagatgagctct |
4000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 35342266 - 35342352
Alignment:
| Q |
192 |
attagtaagaagacatctatgacataatttccaaagatgagctctaattctttgaaggccatgccaaatccacaccaagtcaaagag |
278 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| || ||||||||||| ||| || |||||||| |||||| || |||||||| |
|
|
| T |
35342266 |
attagtaagaagacgagcatgacataacttccaaaggtgggctctaattctatgagggtcatgccaagtccacaacagatcaaagag |
35342352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University