View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19510_low_1 (Length: 1189)
Name: NF19510_low_1
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19510_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 1031; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 1031; E-Value: 0
Query Start/End: Original strand, 1 - 1173
Target Start/End: Original strand, 19167215 - 19168387
Alignment:
| Q |
1 |
gcataaaactatgaggcggataagcattgtagtgaggcatggacagagtaggaggttgaggaaaacctctgggtggagggccaaggagactccaggagct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19167215 |
gcataaaactatgaggcggataagcattgtagtgaggcatggacagagtaggaggttgaggaaaacctctgggtggagggccaaggagactacaggagct |
19167314 |
T |
|
| Q |
101 |
ataaggccattgcacagggcaaaaattagcttgccatggtgctgaatattgaggaaaagagttaccagactggagtatcccgactgttgtgactgatcgg |
200 |
Q |
| |
|
||||||||| ||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19167315 |
ataaggccaatgcacagggaaagaattagcttgccatggtgctgaatattgaagaaaagagttaccagactggagtatcccgactgttgtgactgatcgg |
19167414 |
T |
|
| Q |
201 |
aggaagcaaagggtacacaatcattcttaaatcaatgataacagatggaagcttcatgcccaaaatcatgacaaacatgacactgaatagaattgcagcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19167415 |
aggaagcaaagggtacacaatcattcttaaatcaatgataacagatggaagcttcatgcccaaaatcatgacaaacatgacactgaatagaattgcagcc |
19167514 |
T |
|
| Q |
301 |
atatgaaatattgtcctatatttcatatggacacttctaattgaaggagtgtcccggtgtctgacaccgacacttgtgattacattgaattgtgtcannn |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19167515 |
atatgaaatattgtcctatatttcatatggacacttctaattgaaggagtgtcccggtgtctgacaccgacacttgtgattacattgaattgtgtcattt |
19167614 |
T |
|
| Q |
401 |
nnnncaaaattttatcggtgtcaacgtgtctgtgtcagtgtcgtgtccggtgtctgttcttcataaataggacacaatgttatgagtacaaataaatata |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || |||||| |
|
|
| T |
19167615 |
ttttcaaaattttatcggtgtcaacgtgtctgtgtcagtgtcgtgtctggtgtctgttcttcataaataggacacaatgttatcagtacagatgaatata |
19167714 |
T |
|
| Q |
501 |
ctatttcaattttactttgttactacttttctatccttcgactataattttgataggttaagtattggtgaagaagtgcccccacttgtgttccaggtta |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19167715 |
ctatttcaattttactttgttactacttttctatccttcgactataattttgataggttaagtattggtgaagaagtgcccccacttgtgttctaggtta |
19167814 |
T |
|
| Q |
601 |
tgtgctatttttcgttgtcagtctcaacaacatataaataactcaattatctataattgttagcatctaaaccacgattatcttatccactctacaaagg |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19167815 |
tgtgctatttttcgttgtcagtctcaacaacatataaataactcaattatctataattgttagcatctaaaccacgattatcttatccactctacaaagg |
19167914 |
T |
|
| Q |
701 |
tgaaagtgattgaacaaaaactaaccttgaatgcacctaattttccatctttagtgcgtgttccctccgggaagaaaaagacagaggctccnnnnnnnat |
800 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
19167915 |
tgaaagtgattgcacaaaaactaaccttgaatgcacctaattttccatctttagtgcgtgttccctccgggaagaaaaagacagaggctcctttcttgat |
19168014 |
T |
|
| Q |
801 |
cagatccatgcatcgtttaagacagtcctatacatgaagaagcatttaaccaataagttggtaaaattaggtacnnnnnnnncaatggttgaagaatgct |
900 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
19168015 |
gagatcaatgcatcgtttaagacagtcctatacatgaagaagcatttaaccaataagttcataaaattaggtacacaaaaaacaatggttgaagaatgct |
19168114 |
T |
|
| Q |
901 |
actaccatacataccatctggcttcggctgtccatacgcttcaaaggaattacacccaaaagaaacattgcccaaccaattataggaaaaaggaatatcc |
1000 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19168115 |
actaccatacataccatctggcttcggctgtccatgcgcttcaaaggaattacacccaaaagaaacattgcccaaccaattatcggaaaaaggaatatcc |
19168214 |
T |
|
| Q |
1001 |
cagtcttgcttatgaatttaaagcttcttccgagagtaagaagagtatatatatctagaaaactctgatgattggaaacatagacagcgggagtatctgg |
1100 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19168215 |
cagtcttacttataaatttaaagcttcttccgagagtaagaagagtatatatatctagaaaactctgatgattggaaacatagacagcgggagtatctgg |
19168314 |
T |
|
| Q |
1101 |
agatggtagattctccaagccttcgtattcaattttgaaaaacggagtgacagtgagtgaagcccatagtttg |
1173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19168315 |
agatggtagattctccaagccttcgtattcaattttgaaaaacggagtgacagtgagtgaagcccatagtttg |
19168387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 331 - 397
Target Start/End: Original strand, 16207560 - 16207626
Alignment:
| Q |
331 |
acacttctaattgaaggagtgtcccggtgtctgacaccgacacttgtgattacattgaattgtgtca |
397 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
16207560 |
acacttctaattgacggtgtgtcttagtgtctgacaccaacacttgtgattacattgaattatgtca |
16207626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 30080442 - 30080478
Alignment:
| Q |
330 |
gacacttctaattgaaggagtgtcccggtgtctgaca |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30080442 |
gacacttctaattgaaggagtgtcccggtgtccgaca |
30080478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 3e-17; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 363 - 454
Target Start/End: Complemental strand, 1334719 - 1334629
Alignment:
| Q |
363 |
gacaccgacacttgtgattacattgaattgtgtcannnnnnncaaaattttatcggtgtcaacgtgtctgtgtcagtgtcgtgtccggtgtc |
454 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1334719 |
gacaccgacatttgtgattacattgaattatgtc-cttttttcaaaattttatccgtgtcaatgtgtctgtgtcagtgtcgtgtccggtgtc |
1334629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 329 - 430
Target Start/End: Complemental strand, 19369913 - 19369809
Alignment:
| Q |
329 |
ggacacttctaattgaaggagtgtcccggtgtct----gacaccgacacttgtgattacattgaattgtgtcannnnnnncaaaattttatcggtgtcaa |
424 |
Q |
| |
|
|||||||||| |||||||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| |
|
|
| T |
19369913 |
ggacacttctgattgaaggcgtgtctcggtgtcgacacgacaccgacacttgtgattacattgaattatgtca-ttttctcaaaattttatccgtgtcaa |
19369815 |
T |
|
| Q |
425 |
cgtgtc |
430 |
Q |
| |
|
|||||| |
|
|
| T |
19369814 |
cgtgtc |
19369809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 358 - 397
Target Start/End: Original strand, 6751878 - 6751917
Alignment:
| Q |
358 |
tgtctgacaccgacacttgtgattacattgaattgtgtca |
397 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6751878 |
tgtccgacaccgacacttgtgattacattgaattatgtca |
6751917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 397
Target Start/End: Original strand, 785456 - 785490
Alignment:
| Q |
363 |
gacaccgacacttgtgattacattgaattgtgtca |
397 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
785456 |
gacaccgacacttgtgattacattgaattatgtca |
785490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 363 - 454
Target Start/End: Complemental strand, 1885631 - 1885541
Alignment:
| Q |
363 |
gacaccgacacttgtgattacattgaattgtgtcannnnnnncaaaattttatcggtgtcaacgtgtctgtgtcagtgtcgtgtccggtgtc |
454 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||| ||||| | ||||| || |||||||||||||||||||| |
|
|
| T |
1885631 |
gacaccgacacttgtgattacattgaattatgtca-ttttttcaaaattttatccgtgtcgatgtgtccgtatcagtgtcgtgtccggtgtc |
1885541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 357 - 397
Target Start/End: Complemental strand, 25956509 - 25956469
Alignment:
| Q |
357 |
gtgtctgacaccgacacttgtgattacattgaattgtgtca |
397 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25956509 |
gtgtccgacaccgacacttgtgattacattgaattatgtca |
25956469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 330 - 391
Target Start/End: Original strand, 18512110 - 18512171
Alignment:
| Q |
330 |
gacacttctaattgaaggagtgtcccggtgtctgacaccgacacttgtgattacattgaatt |
391 |
Q |
| |
|
||||||||| |||||||| |||||||||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
18512110 |
gacacttctgattgaaggtgtgtcccggtgtgtgacactgacacatgtgattacattgaatt |
18512171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 357 - 454
Target Start/End: Original strand, 43586000 - 43586096
Alignment:
| Q |
357 |
gtgtctgacaccgacacttgtgattacattgaattgtgtcannnnnnncaaaattttatcggtgtcaacgtgtctgtgtcagtgtcgtgtccggtgtc |
454 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| |||| ||||||| |||||||| ||||||||||||| |
|
|
| T |
43586000 |
gtgtccgacaccgacacttgtgattacattgaattatgtca-ttttctcaaaattttatctgtgttgacgtgtcagtgtcagtaccgtgtccggtgtc |
43586096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 8300184 - 8300254
Alignment:
| Q |
327 |
atggacacttctaattgaaggagtgtcccggtgtctgacaccgacacttgtgattacattgaattgtgtca |
397 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||| |||||||||||| |||||||| | |||| ||||| |
|
|
| T |
8300184 |
atggacacttctgattgaaggcgtgtcccggtgtccaacaccgacacttatgattacactaaattatgtca |
8300254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 397
Target Start/End: Original strand, 37211853 - 37211920
Alignment:
| Q |
330 |
gacacttctaattgaaggagtgtcccggtgtctgacaccgacacttgtgattacattgaattgtgtca |
397 |
Q |
| |
|
|||| ||||||||||||| || |||| ||||| |||| ||||||||| ||||||||||||||||||| |
|
|
| T |
37211853 |
gacaattctaattgaaggcgtatcccagtgtccgacatagacacttgtaattacattgaattgtgtca |
37211920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 349 - 397
Target Start/End: Complemental strand, 13117501 - 13117453
Alignment:
| Q |
349 |
gtgtcccggtgtctgacaccgacacttgtgattacattgaattgtgtca |
397 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13117501 |
gtgtcccagtgtccgacaccgacacttgtgattacattgaattttgtca |
13117453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 436
Target Start/End: Complemental strand, 37496761 - 37496690
Alignment:
| Q |
364 |
acaccgacacttgtgattacattgaattgtgtcannnnnnncaaaattttatcggtgtcaacgtgtctgtgtc |
436 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| ||||| |
|
|
| T |
37496761 |
acaccgacacttgtgattacattgaattatgtca-ttttctcaaaaaattatcggtgtcaacgtgtcagtgtc |
37496690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 329 - 397
Target Start/End: Original strand, 24295104 - 24295172
Alignment:
| Q |
329 |
ggacacttctaattgaaggagtgtcccggtgtctgacaccgacacttgtgattacattgaattgtgtca |
397 |
Q |
| |
|
|||| ||||| |||||||| || ||||| || |||||||||||||||||||||||| |||||||||| |
|
|
| T |
24295104 |
ggacgcttctgattgaaggcatgccccggcatcagacaccgacacttgtgattacattaaattgtgtca |
24295172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 357 - 397
Target Start/End: Original strand, 14338478 - 14338518
Alignment:
| Q |
357 |
gtgtctgacaccgacacttgtgattacattgaattgtgtca |
397 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
14338478 |
gtgtctgacaccgacatttgtgattacattgaattatgtca |
14338518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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