View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19510_low_15 (Length: 453)
Name: NF19510_low_15
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19510_low_15 |
 | |
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| [»] scaffold0534 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 17 - 439
Target Start/End: Complemental strand, 36396671 - 36396249
Alignment:
| Q |
17 |
gcaaatgttttagatttagaaacaagaagttcaccatctcttaaggttttgtcaatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36396671 |
gcaaatgttttagatttagaaacaagaagttcaccatctcttaaggttttgtcaatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaa |
36396572 |
T |
|
| Q |
117 |
gtagtagaatcaaagagttaagaagtaaattattatgcatcactgacaacttttgtttataattttgggacgtaacaaagtagagatgatttgtagcaca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
36396571 |
gtagtagaatcaaagagttaagaagtaaattattatgcatcactgacaacttttgtttataattttgggatgtaacaaagtagagatgatttgtagcaga |
36396472 |
T |
|
| Q |
217 |
gtccattgagttcctctttgagaaccttcttggcttgtatgtggagaaagttgaaatagtccaactgacacaaatttcactcttaaactgaacataactt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36396471 |
gtccattgagttcctctttgagaaccttcttggcttgtatgtggagaaagttgaaatagtccaactgacacaaatttcactcttaaactgaacataactt |
36396372 |
T |
|
| Q |
317 |
gactaacttatgcactagacgttgaagacactaatttccagcttcactattatattttccacacaatggaccagtgatagcgacacctagctaggaagtg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36396371 |
gactaacttatgcactagacgttgaagacactaatttccagcttcactattatattttccacacaatggaccagtgatagcgacacctagctaggaagtg |
36396272 |
T |
|
| Q |
417 |
aagatttttctagtgaataatac |
439 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
36396271 |
aagatttttctagtgaataatac |
36396249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 439
Target Start/End: Complemental strand, 36386888 - 36386465
Alignment:
| Q |
17 |
gcaaatgttttagatttagaaacaagaagttcaccatctcttaaggttttgtcaatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36386888 |
gcaaatgttttagatttagaaacaagaagttcaccatctctcaggggtttgtgaatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaa |
36386789 |
T |
|
| Q |
117 |
gtagtagaatcaaagagttaagaagtaaattattatgcatcactgacaacttttgtttataattttgggacgtaacaaagtagagatgatttgtagcaca |
216 |
Q |
| |
|
| || ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||| || ||||||||||||||| ||||||||||||| |
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|
| T |
36386788 |
ggagcagaatcaaagagttaagaagtgaattattatgcatcactgacaacttgtgtttatgattttaggttgtaacaaagtagagaagatttgtagcaca |
36386689 |
T |
|
| Q |
217 |
gtccattgagttcctctttgagaaccttcttggcttgtatgtggagaaagttgaaatagtccaactgacacaaatttcactcttaaactgaacata---a |
313 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||| |
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|
| T |
36386688 |
gtccattgagtt-ctctttgagaaccttcttgccttgtatgtggagaaagttgaaatagtccaa-tgacacaaattttactcttaaactgcacatagtcg |
36386591 |
T |
|
| Q |
314 |
cttg-actaacttatgcactagacgttgaagacactaatttccagcttcactattatattttccacacaatggaccagtgatagcgacacctagctagga |
412 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
36386590 |
cttgtcctaacttatgcactagacgttgaagacactaattcccagcttcactattatattttccacacaatggaccagtgat-gcgacacctagctagga |
36386492 |
T |
|
| Q |
413 |
agtgaagatttttctagtgaataatac |
439 |
Q |
| |
|
|||||||| |||||||||||||||||| |
|
|
| T |
36386491 |
agtgaagaattttctagtgaataatac |
36386465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 36403604 - 36403501
Alignment:
| Q |
17 |
gcaaatgttttagatttagaaacaagaagttcaccatctcttaaggttttgtcaatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaa |
116 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
36403604 |
gcaaaggttttagatttagaaacaagaagttcaccatctcttaaggttttgtcgatagatatggtatcagaagaacaagagcaaaaagagaatgtgagga |
36403505 |
T |
|
| Q |
117 |
gtag |
120 |
Q |
| |
|
|||| |
|
|
| T |
36403504 |
gtag |
36403501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 36410921 - 36410804
Alignment:
| Q |
17 |
gcaaatgttttagatttagaaacaagaagttcaccatctcttaaggttttgtcaatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaa |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| || ||||| ||||| |||||||||||||||||||| ||||||||| || |||||| |
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|
| T |
36410921 |
gcaaatgttttagatttagaaatgagaagttcaccatctcttatgggtttgtgaatagttatggtatcagaagaacaagggcaaaaagataaggtgagac |
36410822 |
T |
|
| Q |
117 |
gtagtagaatcaaagagt |
134 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
36410821 |
atagtagaatcaaagagt |
36410804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 36416252 - 36416135
Alignment:
| Q |
17 |
gcaaatgttttagatttagaaacaagaagttcaccatctcttaaggttttgtcaatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaa |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| || ||||| ||||| |||||||||||||||||||| ||||||||| || |||||| |
|
|
| T |
36416252 |
gcaaatgttttagatttagaaatgagaagttcaccatctcttatgggtttgtgaatagttatggtatcagaagaacaagggcaaaaagataaggtgagac |
36416153 |
T |
|
| Q |
117 |
gtagtagaatcaaagagt |
134 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
36416152 |
atagtagaatcaaagagt |
36416135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 36425087 - 36424970
Alignment:
| Q |
17 |
gcaaatgttttagatttagaaacaagaagttcaccatctcttaaggttttgtcaatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaa |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| || ||||| ||||| |||||||||||||||||||| ||||||||| || |||||| |
|
|
| T |
36425087 |
gcaaatgttttagatttagaaatgagaagttcaccatctcttatgggtttgtgaatagttatggtatcagaagaacaagggcaaaaagataaggtgagac |
36424988 |
T |
|
| Q |
117 |
gtagtagaatcaaagagt |
134 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
36424987 |
atagtagaatcaaagagt |
36424970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 24 - 133
Target Start/End: Complemental strand, 36432937 - 36432831
Alignment:
| Q |
24 |
ttttagatttagaaacaagaagttcaccatctcttaaggttttgtcaatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaagtagtag |
123 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| | |||| || ||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36432937 |
ttttagatttagaaatcagaagctcaccatctcttaatggtttgacagtagatatagtatcagaagaacaagagcaaaaagag---gtgagaagtagtag |
36432841 |
T |
|
| Q |
124 |
aatcaaagag |
133 |
Q |
| |
|
|||||||||| |
|
|
| T |
36432840 |
aatcaaagag |
36432831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 36372932 - 36372657
Alignment:
| Q |
17 |
gcaaatgttttagatttagaaacaagaagttcaccatctcttaaggttttgtcaatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaa |
116 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| ||||||||||||| | ||||||| |||||||| |||||| ||||||||||||||| ||||| || ||| |
|
|
| T |
36372932 |
gcaaaagttttggatttggaaacaagaagctcaccatctcttattggtttgtcagtagatatgatatcagtagaacaagagcaaaaggagaaggtcggaa |
36372833 |
T |
|
| Q |
117 |
gtagtagaatcaaagagttaagaagta---aattattatgcatcactgacaacttttgtttataattttgggacgtaacaaagtagagatgatttgtagc |
213 |
Q |
| |
|
| ||||||||||||||||| | ||| | || ||||||| || | | ||||| ||||||| ||||| || || |||||||||| | |||| |||| |
|
|
| T |
36372832 |
ggagtagaatcaaagagtttataaggaaccaactattatgtattatt---aacttgtgtttatgatttttggctgtgacaaagtagaaaatatttttagc |
36372736 |
T |
|
| Q |
214 |
acagtccattgagttcctctttgagaaccttcttggcttgtatgtggagaaagttgaaatagtccaactgacacaaatt |
292 |
Q |
| |
|
| ||||||||| ||| |||||| ||| || ||||| || |||| |||||| ||||||| ||||||||||| ||||| |
|
|
| T |
36372735 |
agagtccattgtgttactctttcagacccctcttgcattttatgaagagaaaagtgaaatactccaactgacataaatt |
36372657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 36368316 - 36368092
Alignment:
| Q |
17 |
gcaaatgttttagatttagaaacaagaagttcaccatctcttaaggttttgtcaatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaa |
116 |
Q |
| |
|
|||||||||||||||||||| | ||||| ||||||||||||| | | | ||| ||||||| ||||||||||||| || |||||||| || | |||| |
|
|
| T |
36368316 |
gcaaatgttttagatttagatataagaatctcaccatctcttatgcgtgtatcagaagatatgatatcagaagaacaggaacaaaaagaaaaggcaagaa |
36368217 |
T |
|
| Q |
117 |
gtagtagaatcaaagagttaagaagtaaat------tattatgcatcactgacaacttttgtttataattttgggacgtaacaaagtagagatgatttgt |
210 |
Q |
| |
|
| |||||||||||| | ||||| || ||| ||||||| | | | ||||||| ||||||| |||||||| || |||| |||||||||| | | |
|
|
| T |
36368216 |
ggagtagaatcaaataattaagtagccaattattagtattatgtaataataacaacttgtgtttatgattttgggttgtgacaaggtagagatgagcttt |
36368117 |
T |
|
| Q |
211 |
agcacagtccattgagttcctcttt |
235 |
Q |
| |
|
|||| |||||||| ||||||||||| |
|
|
| T |
36368116 |
agcagagtccattaagttcctcttt |
36368092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0534 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0534
Description:
Target: scaffold0534; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 11045 - 11111
Alignment:
| Q |
70 |
aatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaagtagtagaatcaaagagtta |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11045 |
aatagatatggtatcagaagaacaagagcaaaaagagaagctgagaagtagtagaatcaaagagtta |
11111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 42772681 - 42772615
Alignment:
| Q |
70 |
aatagatatggtatcagaagaacaagagcaaaaagagaatgtgagaagtagtagaatcaaagagtta |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42772681 |
aatagatatggtatcagaagaacaagagcaaaaagagaagctgagaagtagtagaatcaaagagtta |
42772615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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