View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19510_low_17 (Length: 419)

Name: NF19510_low_17
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19510_low_17
NF19510_low_17
[»] chr8 (5 HSPs)
chr8 (122-216)||(32975123-32975217)
chr8 (18-66)||(32975272-32975320)
chr8 (377-414)||(6472181-6472218)
chr8 (377-414)||(25266940-25266977)
chr8 (371-419)||(39275777-39275825)
[»] chr5 (11 HSPs)
chr5 (377-415)||(8349811-8349849)
chr5 (377-415)||(42819772-42819810)
chr5 (377-414)||(7401309-7401346)
chr5 (370-414)||(27279865-27279909)
chr5 (377-419)||(1948662-1948704)
chr5 (370-412)||(6656672-6656714)
chr5 (377-414)||(12256321-12256358)
chr5 (377-410)||(17640034-17640067)
chr5 (370-414)||(6042397-6042440)
chr5 (370-414)||(6452336-6452380)
chr5 (377-413)||(14347141-14347177)
[»] scaffold0040 (1 HSPs)
scaffold0040 (370-415)||(48941-48986)
[»] chr6 (3 HSPs)
chr6 (377-414)||(12757381-12757418)
chr6 (377-415)||(12693420-12693458)
chr6 (377-419)||(31052233-31052275)
[»] chr3 (6 HSPs)
chr3 (370-419)||(24681581-24681630)
chr3 (370-415)||(49029584-49029629)
chr3 (377-414)||(31270949-31270986)
chr3 (377-414)||(35546700-35546737)
chr3 (377-414)||(47139114-47139151)
chr3 (377-414)||(55453746-55453783)
[»] chr1 (12 HSPs)
chr1 (370-419)||(12857751-12857800)
chr1 (377-410)||(14673752-14673785)
chr1 (377-410)||(14679130-14679163)
chr1 (377-410)||(26922310-26922343)
chr1 (377-414)||(43684813-43684850)
chr1 (377-410)||(45681183-45681216)
chr1 (370-412)||(51549759-51549801)
chr1 (377-414)||(3268431-3268468)
chr1 (377-414)||(10066258-10066295)
chr1 (377-414)||(28259879-28259916)
chr1 (377-414)||(51345564-51345601)
chr1 (370-410)||(5333586-5333626)
[»] chr2 (6 HSPs)
chr2 (370-413)||(32210411-32210454)
chr2 (376-414)||(5038241-5038279)
chr2 (377-415)||(25921670-25921708)
chr2 (377-410)||(16707134-16707167)
chr2 (377-414)||(29419456-29419493)
chr2 (370-414)||(644849-644893)
[»] scaffold0233 (1 HSPs)
scaffold0233 (377-415)||(18562-18600)
[»] chr7 (8 HSPs)
chr7 (377-415)||(42681525-42681563)
chr7 (370-412)||(48647969-48648011)
chr7 (377-410)||(8898164-8898197)
chr7 (377-414)||(11832088-11832125)
chr7 (377-410)||(27689438-27689471)
chr7 (377-414)||(31857612-31857649)
chr7 (370-419)||(36410395-36410444)
chr7 (373-409)||(45150814-45150850)
[»] chr4 (5 HSPs)
chr4 (377-414)||(8459445-8459482)
chr4 (377-414)||(31312910-31312947)
chr4 (377-414)||(53856131-53856168)
chr4 (370-410)||(1761726-1761766)
chr4 (370-410)||(47300984-47301024)


Alignment Details
Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 122 - 216
Target Start/End: Complemental strand, 32975217 - 32975123
Alignment:
Q  122 cttacaaaagtgaagcagagaggtagcgatgatcagatgagaacactgagtgagggagggcgcactgtttgatttgctggggagaggctgtgtag 216  Q
    |||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32975217 cttacaaaagtgaagcagagaggacgcgatgatcagatgagagcactgagtgagggagggcgcactgtttgatttgctggggaggggctgtgtag 32975123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 32975320 - 32975272
Alignment:
Q  18 gaagataccaacgagaagaagattggcttacgaattcttatgaatacaa 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32975320 gaagataccaacgagaagaagattggcttacgaattcttatgaatacaa 32975272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 6472181 - 6472218
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgaca 414  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  6472181 attttagggaccaaaaatgttgatggaaatttttgaca 6472218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 25266940 - 25266977
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgaca 414  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  25266940 attttagggaccaaaactgttgatggaaatttttgaca 25266977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 419
Target Start/End: Complemental strand, 39275825 - 39275777
Alignment:
Q  371 ttaaatattttagggatcaaaattgttgatggaaatttttgacaaagac 419  Q
    |||| ||||||||||||||||| |||||||| |||||||| ||| ||||    
T  39275825 ttaagtattttagggatcaaaactgttgatgcaaatttttaacagagac 39275777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 377 - 415
Target Start/End: Original strand, 8349811 - 8349849
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgacaa 415  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8349811 attttagggatcaaaattgttgatggaaatttttgacaa 8349849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 377 - 415
Target Start/End: Complemental strand, 42819810 - 42819772
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgacaa 415  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42819810 attttagggatcaaaattgttgatggaaatttttgacaa 42819772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 377 - 414
Target Start/End: Complemental strand, 7401346 - 7401309
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgaca 414  Q
    |||||||||||||||||| |||||||||||||||||||    
T  7401346 attttagggatcaaaatttttgatggaaatttttgaca 7401309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 370 - 414
Target Start/End: Complemental strand, 27279909 - 27279865
Alignment:
Q  370 cttaaatattttagggatcaaaattgttgatggaaatttttgaca 414  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||||    
T  27279909 cttaagtattttagggaccaaaactgttgatggaaatttttgaca 27279865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 419
Target Start/End: Original strand, 1948662 - 1948704
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgacaaagac 419  Q
    |||||| ||| ||||||||||||||||||||||||||| ||||    
T  1948662 attttaaggaccaaaattgttgatggaaatttttgacatagac 1948704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 412
Target Start/End: Original strand, 6656672 - 6656714
Alignment:
Q  370 cttaaatattttagggatcaaaattgttgatggaaatttttga 412  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||    
T  6656672 cttaagtattttagggaccaaaaatgttgatggaaatttttga 6656714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 414
Target Start/End: Complemental strand, 12256358 - 12256321
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgaca 414  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  12256358 attttagggaccaaaaatgttgatggaaatttttgaca 12256321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 410
Target Start/End: Complemental strand, 17640067 - 17640034
Alignment:
Q  377 attttagggatcaaaattgttgatggaaattttt 410  Q
    |||||||||| |||||||||||||||||||||||    
T  17640067 attttagggaccaaaattgttgatggaaattttt 17640034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 414
Target Start/End: Original strand, 6042397 - 6042440
Alignment:
Q  370 cttaaatattttagggatcaaaattgttgatggaaatttttgaca 414  Q
    |||||| |||||||||| |||||| ||||||||||||||||||||    
T  6042397 cttaaacattttagggaccaaaat-gttgatggaaatttttgaca 6042440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 414
Target Start/End: Original strand, 6452336 - 6452380
Alignment:
Q  370 cttaaatattttagggatcaaaattgttgatggaaatttttgaca 414  Q
    |||||| |||||||||| ||||| |||||||| ||||||||||||    
T  6452336 cttaaacattttagggaccaaaactgttgatgaaaatttttgaca 6452380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 413
Target Start/End: Original strand, 14347141 - 14347177
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgac 413  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  14347141 attttaaggaccaaaattgttgatggaaatttttgac 14347177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 370 - 415
Target Start/End: Complemental strand, 48986 - 48941
Alignment:
Q  370 cttaaatattttagggatcaaaattgttgatggaaatttttgacaa 415  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||    
T  48986 cttaagtattttagggaccaaaattgttgatggaaatttttgacaa 48941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 377 - 414
Target Start/End: Complemental strand, 12757418 - 12757381
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgaca 414  Q
    |||||||||| |||||||||||||||||||||||||||    
T  12757418 attttagggaccaaaattgttgatggaaatttttgaca 12757381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 415
Target Start/End: Complemental strand, 12693458 - 12693420
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgacaa 415  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  12693458 attttagggatcaaaaatgttgatggaaacttttgacaa 12693420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 419
Target Start/End: Complemental strand, 31052275 - 31052233
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgacaaagac 419  Q
    |||||||||| ||||| ||||||||||||||||| ||||||||    
T  31052275 attttagggaccaaaactgttgatggaaattttttacaaagac 31052233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 370 - 419
Target Start/End: Complemental strand, 24681630 - 24681581
Alignment:
Q  370 cttaaatattttagggatcaaaattgttgatggaaatttttgacaaagac 419  Q
    ||||| ||||||||||| |||||||||||||||||||| |||||| ||||    
T  24681630 cttaattattttagggaccaaaattgttgatggaaattgttgacagagac 24681581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 370 - 415
Target Start/End: Complemental strand, 49029629 - 49029584
Alignment:
Q  370 cttaaatattttagggatcaaaattgttgatggaaatttttgacaa 415  Q
    |||||| |||||||||||||||||| |||||| |||||||||||||    
T  49029629 cttaaacattttagggatcaaaatttttgatgaaaatttttgacaa 49029584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 31270949 - 31270986
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgaca 414  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  31270949 attttagggaccaaaaatgttgatggaaatttttgaca 31270986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 35546700 - 35546737
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgaca 414  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  35546700 attttagggaccaaaattgttgatgaaaatttttgaca 35546737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 414
Target Start/End: Complemental strand, 47139151 - 47139114
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgaca 414  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  47139151 attttagggaccaaaaatgttgatggaaatttttgaca 47139114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 55453746 - 55453783
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgaca 414  Q
    ||||||||||||||||||||||||| || |||||||||    
T  55453746 attttagggatcaaaattgttgatgaaattttttgaca 55453783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 370 - 419
Target Start/End: Complemental strand, 12857800 - 12857751
Alignment:
Q  370 cttaaatattttagggatcaaaattgttgatggaaatttttgacaaagac 419  Q
    |||||| |||||||||| ||||||||||||| ||||||||||||| ||||    
T  12857800 cttaaacattttagggaccaaaattgttgatagaaatttttgacagagac 12857751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 377 - 410
Target Start/End: Complemental strand, 14673785 - 14673752
Alignment:
Q  377 attttagggatcaaaattgttgatggaaattttt 410  Q
    ||||||||||||||||||||||||||||||||||    
T  14673785 attttagggatcaaaattgttgatggaaattttt 14673752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 377 - 410
Target Start/End: Complemental strand, 14679163 - 14679130
Alignment:
Q  377 attttagggatcaaaattgttgatggaaattttt 410  Q
    ||||||||||||||||||||||||||||||||||    
T  14679163 attttagggatcaaaattgttgatggaaattttt 14679130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 377 - 410
Target Start/End: Complemental strand, 26922343 - 26922310
Alignment:
Q  377 attttagggatcaaaattgttgatggaaattttt 410  Q
    ||||||||||||||||||||||||||||||||||    
T  26922343 attttagggatcaaaattgttgatggaaattttt 26922310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 377 - 414
Target Start/End: Complemental strand, 43684850 - 43684813
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgaca 414  Q
    |||||||||| |||||||||||||||||||||||||||    
T  43684850 attttagggaccaaaattgttgatggaaatttttgaca 43684813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 377 - 410
Target Start/End: Original strand, 45681183 - 45681216
Alignment:
Q  377 attttagggatcaaaattgttgatggaaattttt 410  Q
    ||||||||||||||||||||||||||||||||||    
T  45681183 attttagggatcaaaattgttgatggaaattttt 45681216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 412
Target Start/End: Complemental strand, 51549801 - 51549759
Alignment:
Q  370 cttaaatattttagggatcaaaattgttgatggaaatttttga 412  Q
    |||||| |||||||||| ||||| |||||||||||||||||||    
T  51549801 cttaaacattttagggaccaaaaatgttgatggaaatttttga 51549759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 3268431 - 3268468
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgaca 414  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  3268431 attttaaggaccaaaattgttgatggaaatttttgaca 3268468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 10066258 - 10066295
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgaca 414  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  10066258 attttaaggaccaaaattgttgatggaaatttttgaca 10066295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 414
Target Start/End: Complemental strand, 28259916 - 28259879
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgaca 414  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  28259916 attttagggaccaaaactgttgatggaaatttttgaca 28259879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 414
Target Start/End: Complemental strand, 51345601 - 51345564
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgaca 414  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  51345601 attttagggaccaaaaatgttgatggaaatttttgaca 51345564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 5333586 - 5333626
Alignment:
Q  370 cttaaatattttagggatcaaaattgttgatggaaattttt 410  Q
    |||||| |||||||||| |||||||||||||| ||||||||    
T  5333586 cttaaacattttagggaccaaaattgttgatgaaaattttt 5333626  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 370 - 413
Target Start/End: Original strand, 32210411 - 32210454
Alignment:
Q  370 cttaaatattttagggatcaaaattgttgatggaaatttttgac 413  Q
    |||||| |||||||||| |||||||||||||| |||||||||||    
T  32210411 cttaaacattttagggaccaaaattgttgatgaaaatttttgac 32210454  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 414
Target Start/End: Original strand, 5038241 - 5038279
Alignment:
Q  376 tattttagggatcaaaattgttgatggaaatttttgaca 414  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  5038241 tattttagggaccaaaactgttgatggaaatttttgaca 5038279  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 415
Target Start/End: Original strand, 25921670 - 25921708
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgacaa 415  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  25921670 attttagggaccaaaactgttgatggaaatttttgacaa 25921708  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 410
Target Start/End: Complemental strand, 16707167 - 16707134
Alignment:
Q  377 attttagggatcaaaattgttgatggaaattttt 410  Q
    |||||||||| |||||||||||||||||||||||    
T  16707167 attttagggaccaaaattgttgatggaaattttt 16707134  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 414
Target Start/End: Complemental strand, 29419493 - 29419456
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgaca 414  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  29419493 attttagggaccaaaactgttgatggaaatttttgaca 29419456  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 414
Target Start/End: Original strand, 644849 - 644893
Alignment:
Q  370 cttaaatattttagggatcaaaattgttgatggaaatttttgaca 414  Q
    ||||| ||||||||||| ||||| |||||||| ||||||||||||    
T  644849 cttaagtattttagggaccaaaactgttgatgaaaatttttgaca 644893  T

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Target: scaffold0233 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 415
Target Start/End: Complemental strand, 18600 - 18562
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgacaa 415  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  18600 attttagggaccaaaactgttgatggaaatttttgacaa 18562  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 415
Target Start/End: Original strand, 42681525 - 42681563
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgacaa 415  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  42681525 attttagggaccaaaaatgttgatggaaatttttgacaa 42681563  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 412
Target Start/End: Original strand, 48647969 - 48648011
Alignment:
Q  370 cttaaatattttagggatcaaaattgttgatggaaatttttga 412  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||    
T  48647969 cttaagtattttagggaccaaaaatgttgatggaaatttttga 48648011  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 410
Target Start/End: Original strand, 8898164 - 8898197
Alignment:
Q  377 attttagggatcaaaattgttgatggaaattttt 410  Q
    |||||||||||||||| |||||||||||||||||    
T  8898164 attttagggatcaaaactgttgatggaaattttt 8898197  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 11832088 - 11832125
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgaca 414  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  11832088 attttagggaccaaaaatgttgatggaaatttttgaca 11832125  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 410
Target Start/End: Complemental strand, 27689471 - 27689438
Alignment:
Q  377 attttagggatcaaaattgttgatggaaattttt 410  Q
    |||||||||||||||| |||||||||||||||||    
T  27689471 attttagggatcaaaaatgttgatggaaattttt 27689438  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 31857612 - 31857649
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgaca 414  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  31857612 attttagggaccaaaaatgttgatggaaatttttgaca 31857649  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 419
Target Start/End: Original strand, 36410395 - 36410444
Alignment:
Q  370 cttaaatattttagggatcaaaattgttgatggaaatttttgacaaagac 419  Q
    ||||||||||||||||||||||| | |||||| |||||||| ||| ||||    
T  36410395 cttaaatattttagggatcaaaaattttgatgaaaattttttacagagac 36410444  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 409
Target Start/End: Complemental strand, 45150850 - 45150814
Alignment:
Q  373 aaatattttagggatcaaaattgttgatggaaatttt 409  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  45150850 aaatattttagggataaaaaatgttgatggaaatttt 45150814  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 8459445 - 8459482
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgaca 414  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  8459445 attttagggaccaaaaatgttgatggaaatttttgaca 8459482  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 31312910 - 31312947
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgaca 414  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  31312910 attttagggaccaaaactgttgatggaaatttttgaca 31312947  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 53856131 - 53856168
Alignment:
Q  377 attttagggatcaaaattgttgatggaaatttttgaca 414  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  53856131 attttagggataaaaaatgttgatggaaatttttgaca 53856168  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 1761726 - 1761766
Alignment:
Q  370 cttaaatattttagggatcaaaattgttgatggaaattttt 410  Q
    |||||| |||||||| ||||||| |||||||||||||||||    
T  1761726 cttaaacattttaggaatcaaaaatgttgatggaaattttt 1761766  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 47301024 - 47300984
Alignment:
Q  370 cttaaatattttagggatcaaaattgttgatggaaattttt 410  Q
    |||||| ||||||||||| |||| |||||||||||||||||    
T  47301024 cttaaacattttagggataaaaaatgttgatggaaattttt 47300984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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