View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19510_low_24 (Length: 358)
Name: NF19510_low_24
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19510_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 249 - 343
Target Start/End: Original strand, 48814093 - 48814187
Alignment:
| Q |
249 |
caccatgttctaacatttgtaagttgtatttacaaactttcctatagttgctcaatcgataatcatgacaatatcataactttccactttagtag |
343 |
Q |
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| T |
48814093 |
caccatgttctaacatctgtaagttgtatttacaaactttcctatagttgctcaatcgataatcatgacaatatcataactttccactttagtag |
48814187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 240 - 344
Target Start/End: Original strand, 48797378 - 48797496
Alignment:
| Q |
240 |
aattgaaagcaccatgttctaacatttgtaagtt------gtatttacaaac-----tttcctatagttgctcaatcg---ataatcatgacaatatcat |
325 |
Q |
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| T |
48797378 |
aattgaatgcaccatgttctaacatttgtaagttgtagtagtatttacaaactttaatttcctatggttgctcaaccgatcataatcatgtcaatatcat |
48797477 |
T |
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| Q |
326 |
aactttccactttagtagt |
344 |
Q |
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| T |
48797478 |
acctttccactttagtagt |
48797496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 149
Target Start/End: Complemental strand, 31676689 - 31676660
Alignment:
| Q |
120 |
taacaaactaaatgtgtagccaatgtttgt |
149 |
Q |
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| T |
31676689 |
taacaaactaaatgtgtagccaatgtttgt |
31676660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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