View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19510_low_26 (Length: 331)
Name: NF19510_low_26
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19510_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 12240002 - 12239689
Alignment:
| Q |
1 |
acaccaatttcactatcagaactaaaagtatcaagaaatgtctcagcaatcttgaattttcttttcttaatgcaaaaactaatcaacttagaacaagtag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12240002 |
acaccaatttcactatcagaactaaaagtatcaagaaatgtctcagcaatcttgaattttctattcttaatgcaaaaactaatcaacttagaacaagtag |
12239903 |
T |
|
| Q |
101 |
cagcatcaggtaaaacatgataaatcttaaaatcttcacaaactgatataaaaaattcccatttcttgaatcttaacaaataccttatcacatggtataa |
200 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12239902 |
cagcatcaggtaaaacatgataaaccttaaaatcttcacaaactgatataaaaaattcccatttcttgaatcttaacaaataccttatcacatggtttaa |
12239803 |
T |
|
| Q |
201 |
ggttgatttcattggtctaaactctggtctatctttgagtctttgataataatcaaaagctagttcatgcttctttggatcctcaaacaacccacataga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12239802 |
ggttgatttcattggtctaaactctggtctatctttgagtctttgataataatcaaaagctagttcatgcttctttggatcctcaaacaacccacataga |
12239703 |
T |
|
| Q |
301 |
aaatcattcaaatt |
314 |
Q |
| |
|
|||||||||||||| |
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|
| T |
12239702 |
aaatcattcaaatt |
12239689 |
T |
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