View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19510_low_27 (Length: 322)
Name: NF19510_low_27
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19510_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 27443432 - 27443128
Alignment:
| Q |
1 |
taagcgcaagaagaaaaatttacttagctaaatgaattgattaatcatatggaaattaattaatgtagttgagtagtgatatatataccatagaaaagga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27443432 |
taagcgcaagaagaaaaatttacttagctaaatgaattgattaatcatatggaaattaattaatgtagttgagtagtgatatatataccatagaagagga |
27443333 |
T |
|
| Q |
101 |
atgcaaaactaaggcatagagcaacacgagtgcttggcattttggatatggcttgattaatcttgttttgcaggcttgtgaatattttctctttcgattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27443332 |
atgcaaaactaaggcatagagcaacacgagtgcttgtcattttggatatggcttgatgaatcttgttttgcaggcttgtgaatattttctctttcgattg |
27443233 |
T |
|
| Q |
201 |
tagtttgctgtttgaaggttattgatgaagttgttctctgcttcatgacat--atatatagccttcttttatcgatggtttgaatcttaattcaacgaat |
298 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27443232 |
tagtttgctgtttgaaggtgattgatgaagttgttctctgcttcatgacataaatatatagccttcttctatcgatggtttgaatcttaattcaacgaat |
27443133 |
T |
|
| Q |
299 |
ggtat |
303 |
Q |
| |
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||||| |
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| T |
27443132 |
ggtat |
27443128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 27221408 - 27221707
Alignment:
| Q |
1 |
taagcgcaagaagaaaaatttacttagctaaatgaattgattaatcatatggaaattaattaatgtagttgagtagtgatatat----ataccatagaaa |
96 |
Q |
| |
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|||||||| ||||| ||||| |||||||||| ||||||||||||| |||||||| ||||||||||||| ||| |||||||| |||||||||| |
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| T |
27221408 |
taagcgcatgaagagaaattaacttagctaagtgaattgattaattatatggaa---aattaatgtagttatgtattgatatatgtacgtaccatagaag |
27221504 |
T |
|
| Q |
97 |
aggaatgcaaaactaaggcatagagcaacacgagtgcttggcattttggatatggc--ttgattaatcttgttttgcaggcttgtgaatattttctcttt |
194 |
Q |
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||||||||||||||||||||||||||||| || ||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27221505 |
aggaatgcaaaactaaggcatagagcaacgcgggtgcttgtcattttggatatggcttttgatgaatcttgttttgcaggcttgtgaatattttctcttt |
27221604 |
T |
|
| Q |
195 |
cgattgtagtttgctgtttgaaggttattgatgaagttgttctctgcttcatgacatatatatagccttcttttatcgatggtttgaatcttaattcaac |
294 |
Q |
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|||||||||||||||||||| | || |||||||||||||||||||||||| |||||||||||||| |||| | |||||| ||||||| ||||||||| |
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| T |
27221605 |
cgattgtagtttgctgtttgtaagtgattgatgaagttgttctctgcttcgtgacatatatatagatttctat--ccgatgggttgaatcgtaattcaac |
27221702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 27215446 - 27215758
Alignment:
| Q |
1 |
taagcgcaagaagaaaaatttacttagctaaatgaattgattaatcatatggaaattaattaatgtagttgagtagtgatatat----ataccatagaaa |
96 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||| ||||||||||||| |||||||| ||||||||||||| ||| |||||||| |||| ||||| |
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| T |
27215446 |
taagcgcatgaagagaaattaacttagctaagtgaattgattaattatatggaa---aattaatgtagttatgtattgatatatgtacgtaccgtagaag |
27215542 |
T |
|
| Q |
97 |
aggaatgcaaaactaaggcatagagcaacacgagtgcttggcattttggatatggc--ttgattaatcttgttttgcaggcttgtgaatattt------- |
187 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
27215543 |
aggaatgcaaaactaaggcacagagcaacacgggtgcttgtcattttggatatggcttttgattaatcttgttttgcaggcttgtgaatatatattaatt |
27215642 |
T |
|
| Q |
188 |
------tctctttcgattgtagtttgctgtttgaaggtta-ttgatgaagttgttctctgcttcatgacatatatatagccttcttttatcgatggtttg |
280 |
Q |
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| |||||||||||||||| ||| ||||||| | |||||||||||| |||||||||| | |||||||||||| ||| ||||||||||||| |
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| T |
27215643 |
agtgagagtttttcgattgtagtttgttgtgtgaaggtgatttgatgaagttgctctctgcttctttacatatatatagatttc---tatcgatggtttg |
27215739 |
T |
|
| Q |
281 |
aatcttaattcaacgaatg |
299 |
Q |
| |
|
|||| | |||||||||||| |
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|
| T |
27215740 |
aatcgtcattcaacgaatg |
27215758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 70 - 307
Target Start/End: Original strand, 27433251 - 27433495
Alignment:
| Q |
70 |
tgagtagtgatatatat-accatagaaaaggaatgcaaaactaaggcatagagcaacacgagtgcttggcattttggatatggcttgattaatcttgttt |
168 |
Q |
| |
|
|||||| |||||||||| ||||||||| |||||||| || |||| ||||| ||||||| | ||| | ||||||||||||| ||||||||||||||||| |
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|
| T |
27433251 |
tgagtactgatatatattaccatagaagaggaatgccaagctaaagcataaagcaacatgggtgttcttcattttggatatgacttgattaatcttgttt |
27433350 |
T |
|
| Q |
169 |
tgcaggcttgtgaatatt-----------ttctctttcgattgtagtttg-ctgtttgaaggttattgatgaagttgttctctgcttcatgacatatata |
256 |
Q |
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|||||||||||||||||| ||||||||| |||||||||| ||||||| || ||||||||| ||| |||||||||| ||||||||||| |
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| T |
27433351 |
tgcaggcttgtgaatattggtgcaatattttctctttcaattgtagtttttctgtttg---gtgattgatgaaattgctctctgcttcttgacatatata |
27433447 |
T |
|
| Q |
257 |
tagccttcttttatcgatggtttgaatcttaattcaacgaatggtattcat |
307 |
Q |
| |
|
|||||| || || |||||||||||||||||||||||||||||||||||| |
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|
| T |
27433448 |
tagcctact---atggatggtttgaatcttaattcaacgaatggtattcat |
27433495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 27208155 - 27208225
Alignment:
| Q |
58 |
aattaatgtagttgagtagtgatatatataccatagaaaaggaatgcaaaactaaggcatagagcaacacg |
128 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||| |||| ||||| ||||||||| |
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| T |
27208155 |
aattaatgtagttgagtactgatatatataccatagaagaggaatgcaaagctaaagcataaagcaacacg |
27208225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 27208270 - 27208343
Alignment:
| Q |
185 |
ttttctctttcgattgtagtttgctgtttgaaggttattgatgaagttgttctctgcttcatgacatatatata |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||| ||||| |||| ||||||||||||| |
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|
| T |
27208270 |
ttttctctttcgattgtagtttgctgtttgaaagtgattgatgaagtttctctcttcttcttgacatatatata |
27208343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 27390259 - 27390304
Alignment:
| Q |
83 |
atataccatagaaaaggaatgcaaaactaaggcatagagcaacacg |
128 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
27390259 |
atataccatagaagaggaatgcaaagctaaggcagagagcaacacg |
27390304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 27410494 - 27410539
Alignment:
| Q |
83 |
atataccatagaaaaggaatgcaaaactaaggcatagagcaacacg |
128 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| ||||||||||| |
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| T |
27410494 |
atataccatagaagaggaatgcaaagctaaggcagagagcaacacg |
27410539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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