View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19510_low_28 (Length: 322)
Name: NF19510_low_28
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19510_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 44501018 - 44500726
Alignment:
| Q |
18 |
cttcacgattgtaccgtgaagggtgcacaaactctctccatatcaaatgaaacacttgtcaatttaaacatggataaaaacatatacaacctttacaaca |
117 |
Q |
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| T |
44501018 |
cttcacgattgtaccgtgaagggtgcacaaactctctccatatcaaatgaaacacttgtcaatttaaccatggataaaaacatatacaacctttacaaca |
44500919 |
T |
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| Q |
118 |
ttgatctaagttctccaagtctttgtaagtttgtttttactggcagtcattatcagaaactttctggaagcaatgcttcttctcttaaacatgtagatat |
217 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44500918 |
ttgatctaagtactccaagtctttgtaagtttgtttttactggtagtcattatcagaatctttctggaagcaatgcttcttctcttaaacatgtagatat |
44500819 |
T |
|
| Q |
218 |
ttatgcacatgtagttccatttagcgaagactctccttattttctattcagctggatactagagcttgctaacataaaatcattgatggtctct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
44500818 |
ttatgcacatgtagttccatttagcgaagactctccttattttc-attcagctggctactagagcttgctaacataaaatcattgacggtctct |
44500726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 45910579 - 45910473
Alignment:
| Q |
118 |
ttgatctaagttctccaagtctttgtaagtttgtttttactggcagtcattatcagaaactttctggaagcaatgcttcttctcttaaacatgtagatat |
217 |
Q |
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|||||||| || ||||||||||||||| |||||||||| | || | || || ||||||||| |||| || ||||| ||||||||||||||||||||| || |
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| T |
45910579 |
ttgatctatgtactccaagtctttgtacgtttgttttttccggtactccttttcagaaactctctgcaaacaatgtttcttctcttaaacatgtagagat |
45910480 |
T |
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| Q |
218 |
ttatgca |
224 |
Q |
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| T |
45910479 |
tcatgca |
45910473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 224
Target Start/End: Complemental strand, 20994388 - 20994274
Alignment:
| Q |
110 |
ttacaacattgatctaagttctccaagtctttgtaagtttgtttttactggcagtcattatcagaaactttctggaagcaatgcttcttctcttaaacat |
209 |
Q |
| |
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|||||| ||||| ||| || ||||||||||||||| |||| ||||| ||| | || |||||||| | | ||| |||||| |||||||||||||||| |
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| T |
20994388 |
ttacaagattgagctatgtactccaagtctttgtacgtttacttttaatggtattccttatcagagaatcattgggagcaatatttcttctcttaaacat |
20994289 |
T |
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| Q |
210 |
gtagatatttatgca |
224 |
Q |
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||||||||| ||||| |
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| T |
20994288 |
gtagatattcatgca |
20994274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 224
Target Start/End: Complemental strand, 2995894 - 2995864
Alignment:
| Q |
194 |
ttcttctcttaaacatgtagatatttatgca |
224 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2995894 |
ttcttctcttaaacatgtagatatttatgca |
2995864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 224
Target Start/End: Original strand, 3978715 - 3978822
Alignment:
| Q |
117 |
attgatctaagttctccaagtctttgtaagtttgtttttactggcagtcattatcagaaactttctggaagcaatgcttcttctcttaaacatgtagata |
216 |
Q |
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|||||| || || ||||||||||||| |||||||||||||| || | || ||||| || || ||||| |||| | ||||||||||||||||||||||| |
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| T |
3978715 |
attgatttatgtactccaagtctttggaagtttgtttttaccggtactccttatctgagtctatctgggagcagtatttcttctcttaaacatgtagata |
3978814 |
T |
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| Q |
217 |
tttatgca |
224 |
Q |
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|| ||||| |
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|
| T |
3978815 |
ttgatgca |
3978822 |
T |
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