View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19510_low_30 (Length: 317)
Name: NF19510_low_30
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19510_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 15525311 - 15525005
Alignment:
| Q |
1 |
tcgctttttcctcaattccttcagccttcttctagggaggtatcctcgcattactaatttgtttcattattgtgtgccagatatcagttatga------a |
94 |
Q |
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| T |
15525311 |
tcgctttttcctcaattccttcagccttcttcttgggaggtatcctcgcattaataatttgtttcattattgtgtgccagatatcagttatgattatgaa |
15525212 |
T |
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| Q |
95 |
tgttccattgtatgtttatcctattctagattcaatgctttaagtacaatggttaaactattcttgaataattgaacaaacgcttgttgcatctcgcagc |
194 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15525211 |
tgttccattgtatgtttatcctattttagattcaatgctttaagtacaatggttaaactgttcttgaataattgaacaaacgcttgttgcatctcgcagc |
15525112 |
T |
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| Q |
195 |
atgttattgttgatttgaatctgcggatacaacacctaagtcaagcactacagcaggtacttgatctagaatcggaggatatacctcttacgagggatgt |
294 |
Q |
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| T |
15525111 |
atgttattgttgatttgaatctgcggatacaacacctaagtcaagcactacagcaggtacttgatctagaaacggaggatatacctcttacgagggatgt |
15525012 |
T |
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| Q |
295 |
gatgatg |
301 |
Q |
| |
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||||||| |
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| T |
15525011 |
gatgatg |
15525005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 240
Target Start/End: Complemental strand, 15544778 - 15544628
Alignment:
| Q |
86 |
agttatgaatgttccattgtatgtttatcctattctagattcaatgctttaagtacaatggttaaactattcttgaataattgaacaaacgcttgttgca |
185 |
Q |
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| T |
15544778 |
agttttgaatgttccattttatgtttatgctattatagtttcaatgctttat----aatagttaaattgttcataaataattgaacaaaagcttgttgca |
15544683 |
T |
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| Q |
186 |
tctcgcagcatgttattgttgatttgaatctgcggatacaacacctaagtcaagc |
240 |
Q |
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| T |
15544682 |
tcttgcagcatgttattgatgatttgagccagcggacacgacgcctaagtcaagc |
15544628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 15564891 - 15564845
Alignment:
| Q |
1 |
tcgctttttcctcaattccttcagccttcttctagggaggtatcctc |
47 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
15564891 |
tcgctttttcctcaattccttcagccttcttctcagaaggtatcctc |
15564845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 15577538 - 15577492
Alignment:
| Q |
1 |
tcgctttttcctcaattccttcagccttcttctagggaggtatcctc |
47 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
15577538 |
tcgctttttcctcaattccttcagccttcttctcagaaggtatcctc |
15577492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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