View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19510_low_33 (Length: 292)
Name: NF19510_low_33
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19510_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 277
Target Start/End: Original strand, 42981953 - 42982219
Alignment:
| Q |
11 |
cacagaccttatcatttgtcctagacacaggtagcagccttgtttggtccccatgtacctctcgctacctctgttccaattgcaacttcccaaacatcaa |
110 |
Q |
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| T |
42981953 |
cacaaaccttatcatttgtcctagacacaggtagcagtcttgtttggtccccatgtacctctcgctacctctgttccaattgcaacttcccaaacatcaa |
42982052 |
T |
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| Q |
111 |
cccaacaaaaatcccagctttcatcccaagaaactcatcaaccaacaaaatcttaggctgcacaaaccccaaatgcggttatattttcggacccgacatc |
210 |
Q |
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| T |
42982053 |
cccaacaaaaatcccagttttcatcccaagaaactcatcaaccaacaaaatcttaggctgcacaaaccccaaatgcggttatattttcggacccgacatc |
42982152 |
T |
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| Q |
211 |
gaatctcgttgccaaggttgcaatccaaatacacgaaactgtaacaacatcacttgcccttcttatt |
277 |
Q |
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| T |
42982153 |
gaatctcgttgccaaggttgcaatccaaatacacaaaactgtaacaacatcacttgcccttcttatt |
42982219 |
T |
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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 39870970 - 39871039
Alignment:
| Q |
11 |
cacagaccttatcatttgtcctagacacaggtagcagccttgtttggtccccatgtacctctcgctacct |
80 |
Q |
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| T |
39870970 |
cacaaaccttatcatttgtcttagacacatgtagcagccttgtttggtccccatgttcctctcgcaacct |
39871039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 3026341 - 3026410
Alignment:
| Q |
11 |
cacagaccttatcatttgtcctagacacaggtagcagccttgtttggtccccatgtacctctcgctacct |
80 |
Q |
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| T |
3026341 |
cacaaaccttatcatttgtcctagacacatagagtagccttgtttggtccccatgttcctctcgcaacct |
3026410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 35381900 - 35381969
Alignment:
| Q |
11 |
cacagaccttatcatttgtcctagacacaggtagcagccttgtttggtccccatgtacctctcgctacct |
80 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||| || |||| ||| |||| |
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| T |
35381900 |
cacaaaccttatcatttgtcctagacacatgtagcagccttgtttggtccccaagttcctcccgcaacct |
35381969 |
T |
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