View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19510_low_34 (Length: 287)

Name: NF19510_low_34
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19510_low_34
NF19510_low_34
[»] chr4 (3 HSPs)
chr4 (1-271)||(35155724-35155992)
chr4 (71-166)||(35162849-35162942)
chr4 (105-160)||(15556435-15556490)
[»] chr8 (2 HSPs)
chr8 (15-166)||(9675262-9675410)
chr8 (2-166)||(9692271-9692432)
[»] chr3 (10 HSPs)
chr3 (49-157)||(16025907-16026012)
chr3 (64-160)||(47413798-47413892)
chr3 (71-156)||(46236399-46236482)
chr3 (106-159)||(51944317-51944370)
chr3 (114-157)||(5156674-5156717)
chr3 (64-158)||(46480221-46480313)
chr3 (206-252)||(47397062-47397108)
chr3 (194-251)||(46491029-46491086)
chr3 (108-157)||(46553837-46553886)
chr3 (109-157)||(46535370-46535418)
[»] chr2 (2 HSPs)
chr2 (51-134)||(20168616-20168696)
chr2 (51-134)||(20359588-20359668)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 35155992 - 35155724
Alignment:
Q  1 cctcgttatctacgtatgactgatgcaattgattgtggtttcagaaattaagatcactcagcaaagagggttgagcacttgtccggcaaagaggattatg 100  Q
    |||||||||||| |||||| ||||||||||||||| |||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||  |    
T  35155992 cctcgttatctatgtatgattgatgcaattgattgcggtttcggaaattaagatcacttagcaaagagggttgaacacttgtccggcaaagaggatt--g 35155895  T
Q  101 tttgggtcaaatcttctctaattaaaaataagaaaggatgatcagctataaagtctagtccggttgatctacccaaggtaaataatgttgtactggctgc 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35155894 tttgggtcaaatcttctctaattaaaaataagaaagggtgatcagctataaagtctagtccggttgatctacccaaggtaaataatgtagtactggctgc 35155795  T
Q  201 aacagctttagtgcctttttcgtttacttcaataaaacacttctgaaatatgctgctaacggagagatttt 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35155794 aacagctttagtgcctttttcgtttacttcaataaaacacttctgaaatatgttgctaacggagagatttt 35155724  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 35162942 - 35162849
Alignment:
Q  71 ttgagcacttgtccggcaaagaggattatgtttgggtcaaatcttctctaattaaaaataagaaaggatgatcagctataaagtctagtccggttg 166  Q
    |||||||||||||| ||||||||||||  ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  35162942 ttgagcacttgtcccgcaaagaggatt--gtttgggtcgaatcttctctaattagaaataagaaaggatgatcagctataaagtctactccggttg 35162849  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 15556490 - 15556435
Alignment:
Q  105 ggtcaaatcttctctaattaaaaataagaaaggatgatcagctataaagtctagtc 160  Q
    ||||||||||||||| |||| ||||||||| || || ||||||| |||||||||||    
T  15556490 ggtcaaatcttctcttattagaaataagaatgggtggtcagctacaaagtctagtc 15556435  T

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Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 166
Target Start/End: Original strand, 9675262 - 9675410
Alignment:
Q  15 tatgactgatgcaattgattgtggtttcagaaattaagatcactcagcaaagagggttgagcacttgtccggcaaagaggattatgtttgggtcaaatct 114  Q
    ||||| ||||||||||||||| ||||| |||| |||||||||| || ||| |||| ||||| || ||||||||||||| ||||  ||||||||| |||||    
T  9675262 tatgagtgatgcaattgattgcggtttgagaagttaagatcacccaacaa-gaggattgagaacctgtccggcaaagatgatt--gtttgggtcgaatct 9675358  T
Q  115 tctctaattaaaaataagaaaggatgatcagctataaagtctagtccggttg 166  Q
    |||||||||| ||||| |||||| ||||| ||||||||||||| ||| ||||    
T  9675359 tctctaattagaaataggaaagggtgatcggctataaagtctattccagttg 9675410  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 166
Target Start/End: Original strand, 9692271 - 9692432
Alignment:
Q  2 ctcgttatctacgtatgactgatgcaattgattgtggtttcagaaattaagatcactcagcaaagagggttgagcacttgtccggcaaagaggattatgt 101  Q
    ||||||||||| |  ||| ||||||||||||||| |||   |||| |||||||||| || ||| |||| ||||| || ||||||||||||| |||   ||    
T  9692271 ctcgttatctatgagtgagtgatgcaattgattgcggtacgagaagttaagatcacccaacaa-gaggattgagaacctgtccggcaaagatgatc--gt 9692367  T
Q  102 ttgggtcaaatcttctctaattaaaaataagaaaggatgatcagctataaagtctagtccggttg 166  Q
    ||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||||| ||| ||||    
T  9692368 ttgggtcaaatcttctctaattagaaataggaaagggtgatcggctataaagtctattccagttg 9692432  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 157
Target Start/End: Complemental strand, 16026012 - 16025907
Alignment:
Q  49 taagatcactcagcaaagagggttgagcacttgtccggcaaagaggattatgtttgggtcaaatcttctctaattaaaaataagaaaggatgatcagcta 148  Q
    |||||||||||| |||| ||| ||||| ||||| ||  |||||||||||  |||| ||| |||||||||||||||| |||||||||||| || |||||||    
T  16026012 taagatcactcaacaaa-aggattgagtacttgccctacaaagaggatt--gtttcggttaaatcttctctaattagaaataagaaagggtggtcagcta 16025916  T
Q  149 taaagtcta 157  Q
     ||| ||||    
T  16025915 caaaatcta 16025907  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 47413798 - 47413892
Alignment:
Q  64 aagagggttgagcacttgtccggcaaagaggattatgtttgggtcaaatcttctctaattaaaaataagaaaggatgatcagctataaagtctagtc 160  Q
    |||||| |||||||| |||||  |||||||||||  |||| |||  ||||||||||||||| |||||||||||| || || |||| |||||||||||    
T  47413798 aagaggattgagcacatgtccaacaaagaggatt--gtttcggttgaatcttctctaattagaaataagaaagggtggtcggctacaaagtctagtc 47413892  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 156
Target Start/End: Original strand, 46236399 - 46236482
Alignment:
Q  71 ttgagcacttgtccggcaaagaggattatgtttgggtcaaatcttctctaattaaaaataagaaaggatgatcagctataaagtct 156  Q
    |||||||| ||||| ||||||||||||  |||  |||| || |||||||||||| ||||| |||||| |||||||||| |||||||    
T  46236399 ttgagcacctgtccagcaaagaggatt--gttccggtcgaaacttctctaattagaaataggaaagggtgatcagctacaaagtct 46236482  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 51944370 - 51944317
Alignment:
Q  106 gtcaaatcttctctaattaaaaataagaaaggatgatcagctataaagtctagt 159  Q
    ||||||||||||||||| | |||||||||||| || ||||||| ||||||||||    
T  51944370 gtcaaatcttctctaatcagaaataagaaagggtggtcagctacaaagtctagt 51944317  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 157
Target Start/End: Complemental strand, 5156717 - 5156674
Alignment:
Q  114 ttctctaattaaaaataagaaaggatgatcagctataaagtcta 157  Q
    ||||||||||| |||||||||||| |||||||||| ||||||||    
T  5156717 ttctctaattagaaataagaaagggtgatcagctacaaagtcta 5156674  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 158
Target Start/End: Complemental strand, 46480313 - 46480221
Alignment:
Q  64 aagagggttgagcacttgtccggcaaagaggattatgtttgggtcaaatcttctctaattaaaaataagaaaggatgatcagctataaagtctag 158  Q
    |||||| |||||||| |||||  |||||| ||||  |||  |||||| ||||||||||| | |||||||||||| || ||||||| |||||||||    
T  46480313 aagaggattgagcacctgtccaacaaagatgatt--gttccggtcaagtcttctctaatcataaataagaaagggtggtcagctacaaagtctag 46480221  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 47397062 - 47397108
Alignment:
Q  206 ctttagtgcctttttcgtttacttcaataaaacacttctgaaatatg 252  Q
    ||||||||||||| || ||||||||||| ||| ||||||||||||||    
T  47397062 ctttagtgcctttctcatttacttcaatgaaatacttctgaaatatg 47397108  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 46491086 - 46491029
Alignment:
Q  194 tggctgcaacagctttagtgcctttttcgtttacttcaataaaacacttctgaaatat 251  Q
    |||||||||||||||  ||||||| ||| ||||| ||||||||| |||| ||||||||    
T  46491086 tggctgcaacagcttcggtgccttcttcatttacatcaataaaagacttgtgaaatat 46491029  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 46553837 - 46553886
Alignment:
Q  108 caaatcttctctaattaaaaataagaaaggatgatcagctataaagtcta 157  Q
    ||||||||||||||| ||||| |||||||| || ||||||| ||||||||    
T  46553837 caaatcttctctaataaaaaacaagaaagggtggtcagctacaaagtcta 46553886  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 46535418 - 46535370
Alignment:
Q  109 aaatcttctctaattaaaaataagaaaggatgatcagctataaagtcta 157  Q
    ||||||||||| || ||||| ||||||||||| ||||||| ||||||||    
T  46535418 aaatcttctcttatcaaaaacaagaaaggatggtcagctacaaagtcta 46535370  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 134
Target Start/End: Original strand, 20168616 - 20168696
Alignment:
Q  51 agatcactcagcaaagagggttgagcacttgtccggcaaagaggattatgtttgggtcaaatcttctctaattaaaaataagaa 134  Q
    |||||||||| ||| |||| ||||||||||| ||| ||||||||||  ||||   ||||||||||| ||||||| |||||||||    
T  20168616 agatcactcatcaa-gaggattgagcacttgcccgacaaagaggat--tgttcccgtcaaatcttccctaattagaaataagaa 20168696  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 134
Target Start/End: Complemental strand, 20359668 - 20359588
Alignment:
Q  51 agatcactcagcaaagagggttgagcacttgtccggcaaagaggattatgtttgggtcaaatcttctctaattaaaaataagaa 134  Q
    |||||||||| ||| |||| ||||||||||| ||| ||||||||||  ||||   ||||||||||| ||||||| |||||||||    
T  20359668 agatcactcatcaa-gaggattgagcacttgcccgacaaagaggat--tgttcccgtcaaatcttccctaattagaaataagaa 20359588  T

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