View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19510_low_39 (Length: 260)
Name: NF19510_low_39
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19510_low_39 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 85 - 245
Target Start/End: Original strand, 6219562 - 6219722
Alignment:
| Q |
85 |
ttagttttcatggttgctcttttcttcatggttttggtgcttattacaacgttccagattcacatcaagagcttccttccattcatgatggttattgttt |
184 |
Q |
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| T |
6219562 |
ttagttttcatggttgctcttttcttcatggttttggtgcttattacaatgttacagattcacatcaagagcttccttccattcatgatggttattgttt |
6219661 |
T |
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| Q |
185 |
tacttggaagtgttgtttcagttcttgctttgatgatgatttctcatacaattgcttggat |
245 |
Q |
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| T |
6219662 |
tacttggaagtgttgtttcagttctagctttgatgatgatttctcctacaattgcttggat |
6219722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 25 - 245
Target Start/End: Complemental strand, 6346608 - 6346388
Alignment:
| Q |
25 |
gcaataatcgggtttgcaacaacaaatgcaagtatggagaaatcaccacttctgtttgctttagttttcatggttgctcttttcttcatggttttggtgc |
124 |
Q |
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| T |
6346608 |
gcaataattgggtttgcaacaacgaatacaagtatcgaaaaatcaccacttctgatggctttggttttcatggttgctctttactacttggttttggtgc |
6346509 |
T |
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| Q |
125 |
ttattacaacgttccagattcacatcaagagcttccttccattcatgatggttattgttttacttggaagtgttgtttcagttcttgctttgatgatgat |
224 |
Q |
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| T |
6346508 |
ttgtgacaatgctacagcttcacatcaagaacttccttccattcatgatggttattgttttacttggaagtgttgtttcagttctagctttgatgatgat |
6346409 |
T |
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| Q |
225 |
ttctcatacaattgcttggat |
245 |
Q |
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| T |
6346408 |
ttctcctacaattgcttggat |
6346388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 82 - 245
Target Start/End: Complemental strand, 6333434 - 6333271
Alignment:
| Q |
82 |
gctttagttttcatggttgctcttttcttcatggttttggtgcttattacaacgttccagattcacatcaagagcttccttccattcatgatggttattg |
181 |
Q |
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| T |
6333434 |
gctttagttttcatggtttctctttactacctggctttggtgcttgtgacattgttgcattttcacatcaagagtttctttccttccaagatgatcattc |
6333335 |
T |
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| Q |
182 |
ttttacttggaagtgttgtttcagttcttgctttgatgatgatttctcatacaattgcttggat |
245 |
Q |
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| T |
6333334 |
ttttacttggaagtgttgtttcagttttagctttgatgataatttctcctacaattgcttggat |
6333271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 245
Target Start/End: Complemental strand, 6325957 - 6325794
Alignment:
| Q |
82 |
gctttagttttcatggttgctcttttcttcatggttttggtgcttattacaacgttccagattcacatcaagagcttccttccattcatgatggttattg |
181 |
Q |
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| T |
6325957 |
gctttagttttcatggtttctctttactacctggctttggtgcttgtaacaatgatacatattcacatcaagagattcattccttccaagatgatcattc |
6325858 |
T |
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| Q |
182 |
ttttacttggaagtgttgtttcagttcttgctttgatgatgatttctcatacaattgcttggat |
245 |
Q |
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| T |
6325857 |
ttttacttggaagtgttgtttcaattttagctttaatggttatttcgccgacaattgcatggat |
6325794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 204
Target Start/End: Original strand, 6242758 - 6242845
Alignment:
| Q |
117 |
tttggtgcttattacaacgttccagattcacatcaagagcttccttccattcatgatggttattgttttacttggaagtgttgtttca |
204 |
Q |
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| T |
6242758 |
tttggtgcttgtgacaatgttacagcttcacatcaatagtttccttccatacatgatggtaattcttttacttggaagtgttatttca |
6242845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 245
Target Start/End: Original strand, 992 - 1094
Alignment:
| Q |
143 |
ttcacatcaagagcttccttccattcatgatggttattgttttacttggaagtgttgtttcagttcttgctttgatgatgatttctcatacaattgcttg |
242 |
Q |
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|||||||||| || ||||| |||||||||||||| ||| ||||||||||||||||||||||| || | || |||||| | ||||| | ||||||||||| |
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| T |
992 |
ttcacatcaatagtttcctcccattcatgatggtaattcttttacttggaagtgttgtttcaattttagcattgatggttatttcgccgacaattgcttg |
1091 |
T |
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| Q |
243 |
gat |
245 |
Q |
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||| |
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| T |
1092 |
gat |
1094 |
T |
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