View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19510_low_4 (Length: 626)
Name: NF19510_low_4
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19510_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 162 - 605
Target Start/End: Original strand, 52034241 - 52034684
Alignment:
| Q |
162 |
acatggtcttgtttttactgtctacgtacccttttctatttacagactccaggtttgaatgttattactgagtacattatgggtgtgattttacccggcc |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52034241 |
acatggtcttgtttttactgtctacgtacccttttctatttacagactccaggtttgaatgttattactgagtacattatgggtgtgattttacccggcc |
52034340 |
T |
|
| Q |
262 |
gaccaatagccaacgtttgcttcaagacctacgggtatatgagtatgtctcaagctatttcctttttatctgatttcaagttaggacattacatgaagat |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52034341 |
gaccaatagccaacgtttgcttcaagacctacgggtatatgagtatgtctcaagctatttcctttttatctgatttcaagttaggacattacatgaagat |
52034440 |
T |
|
| Q |
362 |
cccaccaaggtcaatgttcatagttcaggtatattgtctcaggctatttcctttcatagttattctaaatggtgaatgctaatgatgctcgtaaaattga |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
52034441 |
cccaccaaggtcaatgttcatagttcaggtatattgtctcaggctatttcctttcatagttattttaaatggtgaatactaatgatgctcgtaaaattga |
52034540 |
T |
|
| Q |
462 |
tgccacagattttaggtactcttatagctggaacagtggatgttggtgtggcatggtggttgctaggttcaataaagaacatatgccatgaagatcaact |
561 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52034541 |
tgccacagattttaggtactcttatagctggaacagtggatgttggtgtggcatggtggttgctaggttcaataaagaacatatgccatgaagatcaact |
52034640 |
T |
|
| Q |
562 |
tcccaaaggtagtccatggacatgcccaaatgacaacgtgttct |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52034641 |
tcccaaaggtagtccatggacatgcccaaatgacaacgtgttct |
52034684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 52034099 - 52034209
Alignment:
| Q |
1 |
aaatgccatggtgggctctcatctttgcttctggacttgcactcatttttactcttcccgttgccatcataactgccaccactaatcaggtacgtacgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52034099 |
aaatgccatggtgggctctcatctttgcttctggacttgcactcatttttactcttcccgttgccatcataactgccaccactaatcaggtacgtacgct |
52034198 |
T |
|
| Q |
101 |
tcattccctca |
111 |
Q |
| |
|
||||||||||| |
|
|
| T |
52034199 |
tcattccctca |
52034209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 504 - 585
Target Start/End: Original strand, 36902890 - 36902971
Alignment:
| Q |
504 |
ttggtgtggcatggtggttgctaggttcaataaagaacatatgccatgaagatcaacttcccaaaggtagtccatggacatg |
585 |
Q |
| |
|
||||||| |||||||||||||||| ||| | || |||||||| || |||||| ||||||||||| |||||||||||||| |
|
|
| T |
36902890 |
ttggtgtagcatggtggttgctagactcagtcaaaaacatatgtaataaagatcttcttcccaaaggcagtccatggacatg |
36902971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 332 - 392
Target Start/End: Complemental strand, 2171172 - 2171112
Alignment:
| Q |
332 |
tgatttcaagttaggacattacatgaagatcccaccaaggtcaatgttcatagttcaggta |
392 |
Q |
| |
|
|||||||||| | ||||| |||||||| ||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
2171172 |
tgatttcaagcttggacactacatgaaaatccctccaagatcaatgttcttagttcaggta |
2171112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University