View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19510_low_49 (Length: 209)
Name: NF19510_low_49
Description: NF19510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19510_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 10 - 182
Target Start/End: Complemental strand, 35156211 - 35156039
Alignment:
| Q |
10 |
gcagagagaacaatgaagtagatgaacaagattgtcacaaataatgacctcaattaattaaaatcctnnnnnnntataaactagccacaaaagaagtaac |
109 |
Q |
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| T |
35156211 |
gcagagagaacaatgaagtagatgaacaagattgtcacaaataatgacctcaattaattaaaatcctaaaaaaatataaactagccacaaaagaagtaac |
35156112 |
T |
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| Q |
110 |
cttacaagtaaggtaaccttaatctatttgtcccacacttggatcatataaaaaaacagtaaattatattcat |
182 |
Q |
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| T |
35156111 |
cttacaagtaaggcaaccttaatctatttgtcccacacttggatcatatcaaaaaacagtaaattatattcat |
35156039 |
T |
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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 35163191 - 35163046
Alignment:
| Q |
15 |
gagaacaatgaagtagatgaacaagattgtcacaaataatgacctcaattaattaaaatcctnnnnnnntataaactagccacaaaagaagtaaccttac |
114 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||| || ||||||||| ||||| || || |||||||||||| ||||| |
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| T |
35163191 |
gagaacaacgaagtagatgaacaagattgtcacaaataataacctc----aactaaaatcctatcaaaacataaattaacctcaaaagaagtaatcttac |
35163096 |
T |
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| Q |
115 |
aagtaaggtaaccttaatctatttgtcccacacttggatcatataaaaaa |
164 |
Q |
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| T |
35163095 |
gactaagataatcttaatctattcgtcccacactcagatcatatcaaaaa |
35163046 |
T |
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