View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19511_high_11 (Length: 371)

Name: NF19511_high_11
Description: NF19511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19511_high_11
NF19511_high_11
[»] chr5 (5 HSPs)
chr5 (45-352)||(42637728-42638039)
chr5 (78-119)||(30651129-30651170)
chr5 (78-119)||(31777475-31777516)
chr5 (64-119)||(9575874-9575929)
chr5 (68-119)||(42630061-42630112)
[»] chr3 (1 HSPs)
chr3 (64-123)||(2703330-2703389)
[»] chr2 (4 HSPs)
chr2 (70-117)||(27717421-27717468)
chr2 (78-117)||(34324900-34324939)
chr2 (77-130)||(27735993-27736046)
chr2 (81-117)||(27724755-27724791)
[»] chr8 (3 HSPs)
chr8 (78-120)||(3368291-3368333)
chr8 (78-117)||(4027476-4027515)
chr8 (81-119)||(27183521-27183559)
[»] scaffold0129 (2 HSPs)
scaffold0129 (68-117)||(17601-17650)
scaffold0129 (81-117)||(34010-34046)
[»] chr7 (1 HSPs)
chr7 (78-118)||(25627761-25627801)
[»] chr1 (2 HSPs)
chr1 (71-115)||(344684-344728)
chr1 (64-114)||(368367-368417)
[»] chr6 (5 HSPs)
chr6 (68-117)||(23216418-23216467)
chr6 (79-119)||(13477239-13477279)
chr6 (91-119)||(25319780-25319808)
chr6 (91-119)||(26149473-26149501)
chr6 (91-119)||(29149213-29149241)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 45 - 352
Target Start/End: Original strand, 42637728 - 42638039
Alignment:
Q  45 gttgtaggagaaaatactgcatgtcgaatcattttatagttatctctaacatggtcataaccaaatccatgaagatgaagatgagtcaaggaaggttgag 144  Q
    ||||||||| ||| || ||||||||||||||  |||||||||| ||||| ||||||||||||||| |||||||||||||||| | |||||||||||||||    
T  42637728 gttgtaggataaattattgcatgtcgaatcaacttatagttatttctaatatggtcataaccaaacccatgaagatgaagataattcaaggaaggttgag 42637827  T
Q  145 aagcaaaaggacttcaaggaatgactttgatttccttggtagctgggctccac-atgcagttctcccttcatagatataatcaatacaaataatgccatt 243  Q
    |||||||||||||| ||||||||| |||| |||||||||||||| |  ||||| || ||  ||| |||| | || |||||||||||||||||||||||||    
T  42637828 aagcaaaaggacttgaaggaatgattttgttttccttggtagctagattccacaatacaactcttccttgagagttataatcaatacaaataatgccatt 42637927  T
Q  244 gac---agtataaccacaaattttaaaacgaattccatcttcgggaaatagatttggccaatctaatgcaaccttgttctcaaatctctctccataaaga 340  Q
    |||   |||||||||||||||||||||| |||||| ||| |||| |||||||||||||||||||||| ||||| | |||||||||||||||||| |||||    
T  42637928 gacactagtataaccacaaattttaaaatgaattcgatcatcggaaaatagatttggccaatctaattcaaccctattctcaaatctctctccagaaaga 42638027  T
Q  341 gaaaacactccc 352  Q
    ||||||| ||||    
T  42638028 gaaaacaatccc 42638039  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 30651170 - 30651129
Alignment:
Q  78 ttatagttatctctaacatggtcataaccaaatccatgaaga 119  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  30651170 ttatagtcatctctaacatggtcataaccaaatccatgaaga 30651129  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 31777516 - 31777475
Alignment:
Q  78 ttatagttatctctaacatggtcataaccaaatccatgaaga 119  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  31777516 ttatagtcatctctaacatggtcataaccaaatccatgaaga 31777475  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 9575874 - 9575929
Alignment:
Q  64 catgtcgaatcattttatagttatctctaacatggtcataaccaaatccatgaaga 119  Q
    |||||||||| | |||||||| || | |||| ||||||||||||||||||||||||    
T  9575874 catgtcgaattactttatagtcatatgtaacttggtcataaccaaatccatgaaga 9575929  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 42630061 - 42630112
Alignment:
Q  68 tcgaatcattttatagttatctctaacatggtcataaccaaatccatgaaga 119  Q
    |||||||| ||| |||| |||| |||| ||||||||||||||||||||||||    
T  42630061 tcgaatcactttgtagtcatctttaacttggtcataaccaaatccatgaaga 42630112  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 2703389 - 2703330
Alignment:
Q  64 catgtcgaatcattttatagttatctctaacatggtcataaccaaatccatgaagatgaa 123  Q
    ||||| |||| | |||||||| ||| ||||||||||||||||||||||||||||| ||||    
T  2703389 catgttgaatgactttatagtcatccctaacatggtcataaccaaatccatgaagttgaa 2703330  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 27717421 - 27717468
Alignment:
Q  70 gaatcattttatagttatctctaacatggtcataaccaaatccatgaa 117  Q
    |||| |||||||||| |||||||||||||||||| |||||||||||||    
T  27717421 gaatgattttatagtcatctctaacatggtcatagccaaatccatgaa 27717468  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 34324939 - 34324900
Alignment:
Q  78 ttatagttatctctaacatggtcataaccaaatccatgaa 117  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  34324939 ttatagtcatctctaacatggtcataaccaaatccatgaa 34324900  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 27735993 - 27736046
Alignment:
Q  77 tttatagttatctctaacatggtcataaccaaatccatgaagatgaagatgagt 130  Q
    |||||| | |||||||||||| ||||||||||||||||||| || || ||||||    
T  27735993 tttataatcatctctaacatgatcataaccaaatccatgaatattaaaatgagt 27736046  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 27724755 - 27724791
Alignment:
Q  81 tagttatctctaacatggtcataaccaaatccatgaa 117  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  27724755 tagtcatctcgaacatggtcataaccaaatccatgaa 27724791  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 3368291 - 3368333
Alignment:
Q  78 ttatagttatctctaacatggtcataaccaaatccatgaagat 120  Q
    ||||||| ||||||||| |||||||||||||||||||||||||    
T  3368291 ttatagtcatctctaacttggtcataaccaaatccatgaagat 3368333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 4027515 - 4027476
Alignment:
Q  78 ttatagttatctctaacatggtcataaccaaatccatgaa 117  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  4027515 ttatagtcatctctaacacggtcataaccaaatccatgaa 4027476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 119
Target Start/End: Complemental strand, 27183559 - 27183521
Alignment:
Q  81 tagttatctctaacatggtcataaccaaatccatgaaga 119  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  27183559 tagtcatctctgacatggtcataaccaaatccatgaaga 27183521  T

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Target: scaffold0129 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 17601 - 17650
Alignment:
Q  68 tcgaatcattttatagttatctctaacatggtcataaccaaatccatgaa 117  Q
    |||||| | ||| |||| ||||||||||||||||||||||||||||||||    
T  17601 tcgaatgactttgtagtcatctctaacatggtcataaccaaatccatgaa 17650  T

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Target: scaffold0129; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 34010 - 34046
Alignment:
Q  81 tagttatctctaacatggtcataaccaaatccatgaa 117  Q
    |||| |||||||||||| |||||||||||||||||||    
T  34010 tagtcatctctaacatgctcataaccaaatccatgaa 34046  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 25627801 - 25627761
Alignment:
Q  78 ttatagttatctctaacatggtcataaccaaatccatgaag 118  Q
    ||||||| ||||||| |||||||||||||||||||||||||    
T  25627801 ttatagtcatctctagcatggtcataaccaaatccatgaag 25627761  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 344728 - 344684
Alignment:
Q  71 aatcattttatagttatctctaacatggtcataaccaaatccatg 115  Q
    ||||| |||||||| |||||| |||||||||||||||||||||||    
T  344728 aatcactttatagtcatctctgacatggtcataaccaaatccatg 344684  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 368417 - 368367
Alignment:
Q  64 catgtcgaatcattttatagttatctctaacatggtcataaccaaatccat 114  Q
    |||||| ||| |||||||||| |||||||||||  ||||||||||||||||    
T  368417 catgtctaataattttatagtcatctctaacataatcataaccaaatccat 368367  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 23216418 - 23216467
Alignment:
Q  68 tcgaatcattttatagttatctctaacatggtcataaccaaatccatgaa 117  Q
    |||||| || ||||||| || | |||||||||||||||||||||||||||    
T  23216418 tcgaatgatcttatagtcatttataacatggtcataaccaaatccatgaa 23216467  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 13477279 - 13477239
Alignment:
Q  79 tatagttatctctaacatggtcataaccaaatccatgaaga 119  Q
    ||||||||| |||| |||||||||||||| |||||||||||    
T  13477279 tatagttatgtctagcatggtcataaccagatccatgaaga 13477239  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 119
Target Start/End: Original strand, 25319780 - 25319808
Alignment:
Q  91 taacatggtcataaccaaatccatgaaga 119  Q
    |||||||||||||||||||||||||||||    
T  25319780 taacatggtcataaccaaatccatgaaga 25319808  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 119
Target Start/End: Original strand, 26149473 - 26149501
Alignment:
Q  91 taacatggtcataaccaaatccatgaaga 119  Q
    |||||||||||||||||||||||||||||    
T  26149473 taacatggtcataaccaaatccatgaaga 26149501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 119
Target Start/End: Original strand, 29149213 - 29149241
Alignment:
Q  91 taacatggtcataaccaaatccatgaaga 119  Q
    |||||||||||||||||||||||||||||    
T  29149213 taacatggtcataaccaaatccatgaaga 29149241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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