View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19511_high_14 (Length: 345)

Name: NF19511_high_14
Description: NF19511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19511_high_14
NF19511_high_14
[»] chr4 (1 HSPs)
chr4 (19-333)||(27692397-27692711)
[»] chr3 (1 HSPs)
chr3 (46-300)||(9159602-9159856)
[»] chr1 (27 HSPs)
chr1 (46-108)||(8956225-8956287)
chr1 (181-307)||(10901592-10901718)
chr1 (184-299)||(9463967-9464081)
chr1 (184-299)||(9488561-9488676)
chr1 (46-108)||(8942219-8942281)
chr1 (71-125)||(11028478-11028532)
chr1 (181-304)||(9234040-9234163)
chr1 (178-233)||(9350296-9350351)
chr1 (179-282)||(9453803-9453906)
chr1 (46-108)||(8932303-8932365)
chr1 (71-125)||(11011075-11011129)
chr1 (46-110)||(9233905-9233969)
chr1 (190-282)||(9432827-9432919)
chr1 (71-107)||(10903629-10903665)
chr1 (178-233)||(9318268-9318323)
chr1 (178-233)||(9319979-9320034)
chr1 (46-108)||(8920898-8920960)
chr1 (43-113)||(9320099-9320169)
chr1 (43-113)||(9350416-9350486)
chr1 (71-125)||(10914774-10914828)
chr1 (71-125)||(10979509-10979563)
chr1 (71-125)||(11004893-11004947)
chr1 (254-300)||(11007738-11007784)
chr1 (103-140)||(9056731-9056768)
chr1 (71-140)||(9142742-9142811)
chr1 (71-116)||(11033375-11033420)
chr1 (46-118)||(9486035-9486107)
[»] chr6 (1 HSPs)
chr6 (169-221)||(15927165-15927217)


Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 27692711 - 27692397
Alignment:
Q  19 ggaatttcccgtggaattcaatacttacatcaaggttgtgacatgcaaatcatacactttgatataaaacctcataacattcttcttgacgagaattttg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27692711 ggaatttcccgtggaattcaatacttacatcaaggttgtgacatgcaaatcatacactttgatataaaacctcataacattcttcttgacgagaattttg 27692612  T
Q  119 atccaaagatatctgactttggtttggcgaagttgtaccgaacagatcaaagtattttaactttaacagcggcaagaggaacaatgggatacatggctcc 218  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27692611 acccaaagatatctgactttggtttggcgaagttgtaccgaacagatcaaagtattttaactttaacagcggcaagaggaacaatggggtacatggctcc 27692512  T
Q  219 tgagttgttatacaagaacatcggaagcatctctcacaaagctgatgtttatagttttggaatgatgctaatggaaatggcaggtagaaaaaagaacaaa 318  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27692511 tgagttgttatacaagaacattggaaacatctctcacaaagctgatgtttatagttttggaatgatgctaatggaaatggcaggtagaaaaaagaacaaa 27692412  T
Q  319 agttacatagagaat 333  Q
    |||||||||||||||    
T  27692411 agttacatagagaat 27692397  T

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Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 46 - 300
Target Start/End: Complemental strand, 9159856 - 9159602
Alignment:
Q  46 catcaaggttgtgacatgcaaatcatacactttgatataaaacctcataacattcttcttgacgagaattttgatccaaagatatctgactttggtttgg 145  Q
    |||||||| ||||||||||||||| | || |||||||| || || |||||||| |||||||||||||| |||   || ||| | |||||||||||| | |    
T  9159856 catcaaggatgtgacatgcaaatcttgcattttgatatcaagccccataacatacttcttgacgagaactttatccccaaggtttctgactttggtcttg 9159757  T
Q  146 cgaagttgtaccgaacagatcaaagtattttaactttaacagcggcaagaggaacaatgggatacatggctcctgagttgttatacaagaacatcggaag 245  Q
    | ||| | || |  |  ||  | |||||| ||| |||||| || |||||||||||||| || || |||||||| |||||||| ||||| || || ||  |    
T  9159756 caaagctttatcctaatgacaatagtattgtaaatttaactgcagcaagaggaacaattggttatatggctcccgagttgttctacaaaaatattggtgg 9159657  T
Q  246 catctctcacaaagctgatgtttatagttttggaatgatgctaatggaaatggca 300  Q
      | ||  |||| |||||||||||||||||||||||| |  | ||||||||||||    
T  9159656 agtatcatacaaggctgatgtttatagttttggaatgcttttgatggaaatggca 9159602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 8956287 - 8956225
Alignment:
Q  46 catcaaggttgtgacatgcaaatcatacactttgatataaaacctcataacattcttcttgac 108  Q
    |||||||||||||||||||||||  |||| |||||||| || |||||||||||||||||||||    
T  8956287 catcaaggttgtgacatgcaaattttacattttgatatcaagcctcataacattcttcttgac 8956225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 307
Target Start/End: Complemental strand, 10901718 - 10901592
Alignment:
Q  181 ttaacagcggcaagaggaacaatgggatacatggctcctgagttgttatacaagaacatcggaagcatctctcacaaagctgatgtttatagttttggaa 280  Q
    |||||||| ||||||||||| || ||||||||||| ||||| || || ||||  ||  |||| |  || ||||||||||||||||| |||||||||||||    
T  10901718 ttaacagcagcaagaggaaccattggatacatggcccctgaattattctacagaaatgtcggcacaatatctcacaaagctgatgtctatagttttggaa 10901619  T
Q  281 tgatgctaatggaaatggcaggtagaa 307  Q
    || || | ||||| |||||| ||||||    
T  10901618 tgttgttgatggagatggcaagtagaa 10901592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 299
Target Start/End: Complemental strand, 9464081 - 9463967
Alignment:
Q  184 acagcggcaagaggaacaatgggatacatggctcctgagttgttatacaagaacatcggaagcatctctcacaaagctgatgtttatagttttggaatga 283  Q
    ||||| ||||||||||| |||||||||||||| || |||||||| || |||||||| ||| |  | ||  ||||||| |||||||||||  ||||||||     
T  9464081 acagctgcaagaggaactatgggatacatggcaccagagttgttctataagaacattggaggagtatcgtacaaagcagatgtttatag-cttggaatgt 9463983  T
Q  284 tgctaatggaaatggc 299  Q
    || |||||||||||||    
T  9463982 tgttaatggaaatggc 9463967  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 299
Target Start/End: Complemental strand, 9488676 - 9488561
Alignment:
Q  184 acagcggcaagaggaacaatgggatacatggctcctgagttgttatacaagaacatcggaagcatctctcacaaagctgatgtttatagttttggaatga 283  Q
    ||||| ||||||||||| |||||||||||||| || || ||||| || ||||| || ||| |  | ||  ||||||| ||||||||||| |||||||||     
T  9488676 acagctgcaagaggaactatgggatacatggcaccagaattgttctataagaatattggaggagtatcgtacaaagcagatgtttatagctttggaatgt 9488577  T
Q  284 tgctaatggaaatggc 299  Q
    || |||||||||||||    
T  9488576 tgttaatggaaatggc 9488561  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 8942281 - 8942219
Alignment:
Q  46 catcaaggttgtgacatgcaaatcatacactttgatataaaacctcataacattcttcttgac 108  Q
    |||||||||||||||||||||||  |||| |||||||| || ||||||||||| |||||||||    
T  8942281 catcaaggttgtgacatgcaaattttacattttgatatcaagcctcataacatacttcttgac 8942219  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 11028478 - 11028532
Alignment:
Q  71 tacactttgatataaaacctcataacattcttcttgacgagaattttgatccaaa 125  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||| |||||||    
T  11028478 tacactttgatataaagcctcataacatccttcttgatgagaattttaatccaaa 11028532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 304
Target Start/End: Original strand, 9234040 - 9234163
Alignment:
Q  181 ttaacagcggcaagaggaacaatgggatacatggctcctgagttgttatacaagaacatcggaagcatctctcacaaagctgatgtttatagttttggaa 280  Q
    ||||| ||||||||||||||  |||| |||||||||||||| ||||| ||||| || || ||  |  | ||  ||||||||||||| || ||||||||||    
T  9234040 ttaactgcggcaagaggaactttgggttacatggctcctgaattgttctacaaaaatattggtggagtgtcgtacaaagctgatgtatacagttttggaa 9234139  T
Q  281 tgatgctaatggaaatggcaggta 304  Q
    || |  | ||||||||||||||||    
T  9234140 tgcttttgatggaaatggcaggta 9234163  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 9350351 - 9350296
Alignment:
Q  178 actttaacagcggcaagaggaacaatgggatacatggctcctgagttgttatacaa 233  Q
    |||||||| || |||||||||||||| ||||| ||||||||||||||||| |||||    
T  9350351 actttaactgcagcaagaggaacaattggatatatggctcctgagttgttctacaa 9350296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 282
Target Start/End: Original strand, 9453803 - 9453906
Alignment:
Q  179 ctttaacagcggcaagaggaacaatgggatacatggctcctgagttgttatacaagaacatcggaagcatctctcacaaagctgatgtttatagttttgg 278  Q
    |||| ||||| |||||||||||||| || |||||||||||||| ||||| ||| | || || || || || || ||||| || ||||| |||||||||||    
T  9453803 ctttgacagcagcaagaggaacaattggttacatggctcctgaattgttctaccaaaatattgggagaatatcacacaaggccgatgtgtatagttttgg 9453902  T
Q  279 aatg 282  Q
    ||||    
T  9453903 aatg 9453906  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 8932365 - 8932303
Alignment:
Q  46 catcaaggttgtgacatgcaaatcatacactttgatataaaacctcataacattcttcttgac 108  Q
    |||||||||||||||||||||||  |||| || ||||| || ||||||||||| |||||||||    
T  8932365 catcaaggttgtgacatgcaaattttacatttcgatatcaagcctcataacatacttcttgac 8932303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 11011129 - 11011075
Alignment:
Q  71 tacactttgatataaaacctcataacattcttcttgacgagaattttgatccaaa 125  Q
    |||||||||||||||| |||||||||||||||||||| || |||||  |||||||    
T  11011129 tacactttgatataaagcctcataacattcttcttgatgaaaatttcaatccaaa 11011075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 9233905 - 9233969
Alignment:
Q  46 catcaaggttgtgacatgcaaatcatacactttgatataaaacctcataacattcttcttgacga 110  Q
    |||||||||||||| ||||||||  |||| |||||||| || |||||||| |||||||| |||||    
T  9233905 catcaaggttgtgatatgcaaattctacattttgatatcaagcctcataatattcttctagacga 9233969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 282
Target Start/End: Original strand, 9432827 - 9432919
Alignment:
Q  190 gcaagaggaacaatgggatacatggctcctgagttgttatacaagaacatcggaagcatctctcacaaagctgatgtttatagttttggaatg 282  Q
    |||||||||||||| || |||||||||||||| ||||| ||| | || || || || || || ||||| || ||||| |||||||||||||||    
T  9432827 gcaagaggaacaattggttacatggctcctgaattgttctaccaaaatattgggagaatatcacacaaggccgatgtgtatagttttggaatg 9432919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 10903665 - 10903629
Alignment:
Q  71 tacactttgatataaaacctcataacattcttcttga 107  Q
    |||||||||||||||| ||||||||||||||||||||    
T  10903665 tacactttgatataaagcctcataacattcttcttga 10903629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 9318268 - 9318323
Alignment:
Q  178 actttaacagcggcaagaggaacaatgggatacatggctcctgagttgttatacaa 233  Q
    |||||||| || || ||||||||||| ||||||||||||||||| ||||| |||||    
T  9318268 actttaactgcagctagaggaacaattggatacatggctcctgaattgttctacaa 9318323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 9320034 - 9319979
Alignment:
Q  178 actttaacagcggcaagaggaacaatgggatacatggctcctgagttgttatacaa 233  Q
    |||||||| || |||||||||||||| ||||| ||||||||||| ||||| |||||    
T  9320034 actttaactgcagcaagaggaacaattggatatatggctcctgaattgttctacaa 9319979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 8920960 - 8920898
Alignment:
Q  46 catcaaggttgtgacatgcaaatcatacactttgatataaaacctcataacattcttcttgac 108  Q
    |||||||| ||||||||||||||  |||| ||||| || || ||||||||||| |||||||||    
T  8920960 catcaaggctgtgacatgcaaattttacattttgacatcaagcctcataacatacttcttgac 8920898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 9320169 - 9320099
Alignment:
Q  43 ttacatcaaggttgtgacatgcaaatcatacactttgatataaaacctcataacattcttcttgacgagaa 113  Q
    ||||||||||| ||||||||||||||  | || |||||||| || || |||||||| |||||||| |||||    
T  9320169 ttacatcaaggatgtgacatgcaaattttgcattttgatatcaagccccataacatccttcttgatgagaa 9320099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 9350486 - 9350416
Alignment:
Q  43 ttacatcaaggttgtgacatgcaaatcatacactttgatataaaacctcataacattcttcttgacgagaa 113  Q
    ||||||||||| ||||||||||||||  | || |||||||| || || |||||||| |||||||| |||||    
T  9350486 ttacatcaaggatgtgacatgcaaattttgcattttgatatcaagccccataacatccttcttgatgagaa 9350416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 10914828 - 10914774
Alignment:
Q  71 tacactttgatataaaacctcataacattcttcttgacgagaattttgatccaaa 125  Q
    |||||||||||||||| ||||||||||| |||||||| || |||||  |||||||    
T  10914828 tacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaa 10914774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 10979563 - 10979509
Alignment:
Q  71 tacactttgatataaaacctcataacattcttcttgacgagaattttgatccaaa 125  Q
    |||||||||||||||| ||||||||||| |||||||| || |||||  |||||||    
T  10979563 tacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaa 10979509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 11004893 - 11004947
Alignment:
Q  71 tacactttgatataaaacctcataacattcttcttgacgagaattttgatccaaa 125  Q
    |||||||||||||||| ||||||||||| |||||||| || |||||  |||||||    
T  11004893 tacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaa 11004947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 11007784 - 11007738
Alignment:
Q  254 acaaagctgatgtttatagttttggaatgatgctaatggaaatggca 300  Q
    ||||||||||||||||||||||||| ||| || ||||||| ||||||    
T  11007784 acaaagctgatgtttatagttttgggatgttgttaatggagatggca 11007738  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 9056768 - 9056731
Alignment:
Q  103 cttgacgagaattttgatccaaagatatctgactttgg 140  Q
    |||||||||||||||  |||||||||||||||||||||    
T  9056768 cttgacgagaattttattccaaagatatctgactttgg 9056731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 9142742 - 9142811
Alignment:
Q  71 tacactttgatataaaacctcataacattcttcttgacgagaattttgatccaaagatatctgactttgg 140  Q
    |||| |||||||| || || ||||| ||||| ||||| ||||| |||  |||||||||||||||||||||    
T  9142742 tacattttgatatcaagccccataatattctgcttgatgagaactttattccaaagatatctgactttgg 9142811  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 11033420 - 11033375
Alignment:
Q  71 tacactttgatataaaacctcataacattcttcttgacgagaattt 116  Q
    |||||||||| ||||| ||||||||||| |||||||| ||||||||    
T  11033420 tacactttgacataaagcctcataacatccttcttgatgagaattt 11033375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 9486035 - 9486107
Alignment:
Q  46 catcaaggttgtgacatgcaaatcatacactttgatataaaacctcataacattcttcttgacgagaattttg 118  Q
    |||||||| ||||  ||||||||  | || |||||||| || ||||| ||||||||||||||||| |||||||    
T  9486035 catcaaggctgtggtatgcaaattttgcattttgatattaagcctcacaacattcttcttgacgaaaattttg 9486107  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 15927165 - 15927217
Alignment:
Q  169 agtattttaactttaacagcggcaagaggaacaatgggatacatggctcctga 221  Q
    |||||| | |||||||| || ||||||||||| || |||||||||||||||||    
T  15927165 agtattgtcactttaactgcagcaagaggaacgattggatacatggctcctga 15927217  T

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