View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19511_high_24 (Length: 201)
Name: NF19511_high_24
Description: NF19511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19511_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 37110553 - 37110366
Alignment:
| Q |
1 |
ttggcctgaatcaaagagctttagtgatgaagggtttggaccaattccatcaaagtggagaggaatatgtgataaggggagggatcctagttttcactgc |
100 |
Q |
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| T |
37110553 |
ttggcctgaatcaaagagctttagtgatgaagggtttggaccaattccatcaaagtggagaggaatatgtgataaggggagggatcctagttttcactgc |
37110454 |
T |
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| Q |
101 |
aacaggtatgttatgtatattc-tatttattcattttccacttatcagttgtaaagaaggtataaatatgtttttgatacatgtaaat |
187 |
Q |
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| T |
37110453 |
aacaggtatgttatgcatattcttatttattcattttccacttatcagttctaaagaaggtataaatatgtttttgatacatgtaaat |
37110366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 42733431 - 42733475
Alignment:
| Q |
1 |
ttggcctgaatcaaagagctttagtgatgaagggtttggaccaat |
45 |
Q |
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| T |
42733431 |
ttggccagaatcaaagagttttagtgatgaaggatttgggccaat |
42733475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 42770132 - 42770100
Alignment:
| Q |
1 |
ttggcctgaatcaaagagctttagtgatgaagg |
33 |
Q |
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| T |
42770132 |
ttggcctgaatcaaagagctttagcgatgaagg |
42770100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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