View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19511_high_3 (Length: 717)

Name: NF19511_high_3
Description: NF19511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19511_high_3
NF19511_high_3
[»] chr4 (12 HSPs)
chr4 (86-708)||(42769567-42770167)
chr4 (380-608)||(42743797-42744031)
chr4 (380-608)||(42753156-42753390)
chr4 (384-608)||(42762778-42763002)
chr4 (457-608)||(42717169-42717320)
chr4 (380-608)||(42734482-42734716)
chr4 (629-704)||(42762700-42762775)
chr4 (106-154)||(42733416-42733464)
chr4 (378-415)||(42717371-42717408)
chr4 (104-154)||(42744263-42744313)
chr4 (104-154)||(42753622-42753672)
chr4 (636-697)||(42734726-42734787)
[»] chr5 (2 HSPs)
chr5 (442-601)||(23040511-23040670)
chr5 (380-425)||(23040443-23040488)
[»] chr3 (1 HSPs)
chr3 (113-153)||(37110521-37110561)


Alignment Details
Target: chr4 (Bit Score: 540; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 86 - 708
Target Start/End: Complemental strand, 42770167 - 42769567
Alignment:
Q  86 ctctaatggaatattgtatgacttatgataggtgtttggcctgaatcaaagagctttagcgatgaaggagtgggtccagttccaaccagatggcgtggaa 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42770167 ctctaatggaatattgtatgacttatgataggtgtttggcctgaatcaaagagctttagcgatgaaggagtgggtccagttccaaccagatggcgtggaa 42770068  T
Q  186 tttgcgatgttgacatagataatactgataaatttaaatgcaacaggttaatcttgttatatactcgtatttatctaatgagcatctttttgttaaaagt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42770067 tttgcgatgttgacatagataatactgataaatttaaatgcaacaggttaatcttgttatatactcgtatttatctaatgagcatctttttgttaaaagt 42769968  T
Q  286 aacacaatgttatgcttctgatacatatatagtttacacataatacctaatttttcactctaactccattattatattatttgttcatgatatataggaa 385  Q
                          |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42769967 ----------------------acatatatagtttacacataatacctaatttttcactctaactccatttttatattatttgttcatgatatataggaa 42769890  T
Q  386 gctaattggagcaagatatttttacaaaggctatttggcagatgctggtaaatccacaaatgtaacattccatagtgcacgcgactttgatggtcatggt 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769889 gctaattggagcaagatatttttacaaaggctatttggcagatgctggtaaatccacaaatgtaacattccatagtgcacgcgactttgatggtcatggt 42769790  T
Q  486 tcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacgag 585  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769789 tcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacgag 42769690  T
Q  586 ttgcggcctataaggtatgttggccaccgcttgctgtaggcggtggatgctatgaagcggacattttggctggtttcgaagctgccatacttgacggtgt 685  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42769689 ttgcggcctataaggtatgttggccaccgcttgctgtgggcggtggatgctatgaagcagacattttggctggtttcgaagctgccatacttgacggtgt 42769590  T
Q  686 tgatgtgatttcggcgtctgtgg 708  Q
    |||||||||||||||||||||||    
T  42769589 tgatgtgatttcggcgtctgtgg 42769567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 380 - 608
Target Start/End: Complemental strand, 42744031 - 42743797
Alignment:
Q  380 taggaagctaattggagcaagatatttttacaaaggctatttggcaga------tgctggtaaatccacaaatgtaacattccatagtgcacgcgacttt 473  Q
    ||||||||| |||||||||||||||||| ||||||||||| ||||||       | ||  || |  | |||||| ||||||| |||||||||| ||||||    
T  42744031 taggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcctattagaaacccaaatgaaacattcaatagtgcacgtgacttt 42743932  T
Q  474 gatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcac 573  Q
    || |||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||    ||||||||||||||||||||||    
T  42743931 gaaggtcatggttcacatactttatcaactgctggaggaaatttcgttgccaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcac 42743832  T
Q  574 ctaacgcacgagttgcggcctataaggtatgttgg 608  Q
    | || ||||||||||| ||||||||||| ||||||    
T  42743831 caaaagcacgagttgcagcctataaggtttgttgg 42743797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 380 - 608
Target Start/End: Complemental strand, 42753390 - 42753156
Alignment:
Q  380 taggaagctaattggagcaagatatttttacaaaggctatttggcaga------tgctggtaaatccacaaatgtaacattccatagtgcacgcgacttt 473  Q
    ||||||||| |||||||||||||||||| ||||||||||| ||||||       | ||  || |  | |||||| ||||||| |||||||||| ||||||    
T  42753390 taggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcctattagaaacccaaatgaaacattcaatagtgcacgtgacttt 42753291  T
Q  474 gatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcac 573  Q
    || |||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||    ||||||||||||||||||||||    
T  42753290 gaaggtcatggttcacatactttatcaactgctggaggaaatttcgttgccaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcac 42753191  T
Q  574 ctaacgcacgagttgcggcctataaggtatgttgg 608  Q
    | || ||||||||||| ||||||||||| ||||||    
T  42753190 caaaagcacgagttgcagcctataaggtttgttgg 42753156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 384 - 608
Target Start/End: Complemental strand, 42763002 - 42762778
Alignment:
Q  384 aagctaattggagcaagatatttttacaaaggctatttggcagatgctggtaaatccacaaatgtaacattccatagtgcacgcgactttgatggtcatg 483  Q
    ||||| |||||||||||||||||||  ||||||| | ||||| || ||  || | ||| ||||||| |  | ||||||||||| ||   ||| |||||||    
T  42763002 aagcttattggagcaagatatttttttaaaggctttctggcaaatccttatagagccaaaaatgtatcgcttcatagtgcacgggatagtgaaggtcatg 42762903  T
Q  484 gttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacg 583  Q
    ||||||| ||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||    ||||||||||||||||||||||| || |||||    
T  42762902 gttcacacactttatcaactgctggaggaaatttcgttgctaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacg 42762803  T
Q  584 agttgcggcctataaggtatgttgg 608  Q
    |||||| ||||||||||| ||||||    
T  42762802 agttgcagcctataaggtttgttgg 42762778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 457 - 608
Target Start/End: Complemental strand, 42717320 - 42717169
Alignment:
Q  457 atagtgcacgcgactttgatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaac 556  Q
    |||||||||| ||| |||||||||||||| |||||||||||||||| || ||||||||||||||||| |||||||||||||||||| |||||   |||||    
T  42717320 atagtgcacgtgacattgatggtcatggtacacatactttatcaactgccggaggaaattttgttgctaatgcaagtgtatttggctatggcaatggaac 42717221  T
Q  557 agcaagtggtggatcacctaacgcacgagttgcggcctataaggtatgttgg 608  Q
    ||||||||||||||| || || ||||||||||  ||||||||||| ||||||    
T  42717220 agcaagtggtggatcgccaaaagcacgagttgtagcctataaggtttgttgg 42717169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 380 - 608
Target Start/End: Original strand, 42734482 - 42734716
Alignment:
Q  380 taggaagctaattggagcaagatatttttacaaaggctatttggcaga------tgctggtaaatccacaaatgtaacattccatagtgcacgcgacttt 473  Q
    ||||||||| ||||| |||||||||||||||||||||||| ||||||       | ||  || |  | |||||| ||||||| ||||||| || |||  |    
T  42734482 taggaagcttattggcgcaagatatttttacaaaggctatatggcagtgccaattcctattagaaacccaaatgaaacattcaatagtgcccgtgacagt 42734581  T
Q  474 gatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcac 573  Q
    |  |||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||| ||||    |||||||||||||||||||| |    
T  42734582 gtaggtcatggttcacatactttatcaactgctggaggaaattttgttgctaatgcaagtgtatttggctatggaaatggaacagcaagtggtggatcgc 42734681  T
Q  574 ctaacgcacgagttgcggcctataaggtatgttgg 608  Q
    | || ||||||||| | ||||||||||| ||||||    
T  42734682 caaaagcacgagtttccgcctataaggtttgttgg 42734716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 629 - 704
Target Start/End: Complemental strand, 42762775 - 42762700
Alignment:
Q  629 tggatgctatgaagcggacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtct 704  Q
    |||||| ||||| || ||||||||||||||||| ||||||||||||  ||| |||||||||||| |||||| ||||    
T  42762775 tggatgttatgatgcagacattttggctggttttgaagctgccataagtgatggtgttgatgtgctttcggtgtct 42762700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 42733416 - 42733464
Alignment:
Q  106 acttatgataggtgtttggcctgaatcaaagagctttagcgatgaagga 154  Q
    ||||||||||||||||||||| ||||||||||| ||||| |||||||||    
T  42733416 acttatgataggtgtttggccagaatcaaagagttttagtgatgaagga 42733464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 378 - 415
Target Start/End: Complemental strand, 42717408 - 42717371
Alignment:
Q  378 tataggaagctaattggagcaagatatttttacaaagg 415  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  42717408 tataggaagcttattggagcaagatatttttacaaagg 42717371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 42744313 - 42744263
Alignment:
Q  104 tgacttatgataggtgtttggcctgaatcaaagagctttagcgatgaagga 154  Q
    |||||||||| |||||||||||| ||||| ||||| ||||| |||||||||    
T  42744313 tgacttatgacaggtgtttggccagaatctaagagttttagtgatgaagga 42744263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 42753672 - 42753622
Alignment:
Q  104 tgacttatgataggtgtttggcctgaatcaaagagctttagcgatgaagga 154  Q
    |||||||||| |||||||||||| ||||| ||||| ||||| |||||||||    
T  42753672 tgacttatgacaggtgtttggccagaatctaagagttttagtgatgaagga 42753622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 697
Target Start/End: Original strand, 42734726 - 42734787
Alignment:
Q  636 tatgaagcggacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttc 697  Q
    ||||| || || |||||||||||||| ||||||||||||  ||| |||||||||||| ||||    
T  42734726 tatgatgcagatattttggctggttttgaagctgccataagtgatggtgttgatgtgctttc 42734787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 442 - 601
Target Start/End: Original strand, 23040511 - 23040670
Alignment:
Q  442 caaatgtaacattccatagtgcacgcgactttgatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttgg 541  Q
    |||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |  ||||||||||| ||||| ||||| |||||||||||    
T  23040511 caaatgaaacattcaatagtgcacgtgactttgatggtcatggttcacatactttatcaactgttggaggaaatttcgttgctaatgcgagtgtatttgg 23040610  T
Q  542 caatggcctaggaacagcaagtggtggatcacctaacgcacgagttgcggcctataaggt 601  Q
    |||||||| |||||||||||||||||||||||| || || |||||||| |||||||||||    
T  23040611 caatggccgaggaacagcaagtggtggatcaccaaaagctcgagttgcagcctataaggt 23040670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 380 - 425
Target Start/End: Original strand, 23040443 - 23040488
Alignment:
Q  380 taggaagctaattggagcaagatatttttacaaaggctatttggca 425  Q
    ||||||||| |||||||||||||||||| ||||||||||| |||||    
T  23040443 taggaagcttattggagcaagatattttaacaaaggctatctggca 23040488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 37110561 - 37110521
Alignment:
Q  113 ataggtgtttggcctgaatcaaagagctttagcgatgaagg 153  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  37110561 ataggcgtttggcctgaatcaaagagctttagtgatgaagg 37110521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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