View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19511_low_1 (Length: 1097)

Name: NF19511_low_1
Description: NF19511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19511_low_1
NF19511_low_1
[»] chr7 (9 HSPs)
chr7 (336-1084)||(19052972-19053720)
chr7 (422-734)||(25717780-25718092)
chr7 (70-311)||(36717110-36717348)
chr7 (1-248)||(1482237-1482500)
chr7 (528-750)||(17146576-17146798)
chr7 (828-975)||(42301278-42301425)
chr7 (1-54)||(36717025-36717078)
chr7 (528-630)||(15560925-15561027)
chr7 (277-314)||(1482586-1482623)
[»] chr1 (2 HSPs)
chr1 (336-734)||(29684721-29685109)
chr1 (528-643)||(23307424-23307539)
[»] chr3 (8 HSPs)
chr3 (798-1023)||(50808910-50809135)
chr3 (798-1023)||(50866727-50866952)
chr3 (528-750)||(22806685-22806911)
chr3 (828-903)||(22761485-22761560)
chr3 (528-643)||(380097-380212)
chr3 (528-643)||(3555755-3555870)
chr3 (1042-1084)||(50808850-50808892)
chr3 (1042-1084)||(50866970-50867012)
[»] chr8 (1 HSPs)
chr8 (888-1023)||(2685658-2685793)
[»] chr2 (3 HSPs)
chr2 (888-1023)||(45009082-45009217)
chr2 (528-643)||(22828294-22828406)
chr2 (500-536)||(8032397-8032433)
[»] chr5 (1 HSPs)
chr5 (396-541)||(22914060-22914205)
[»] chr4 (2 HSPs)
chr4 (888-1023)||(5477521-5477656)
chr4 (528-642)||(14801344-14801458)
[»] scaffold0009 (1 HSPs)
scaffold0009 (828-984)||(93220-93376)
[»] scaffold0005 (1 HSPs)
scaffold0005 (528-642)||(38269-38383)
[»] scaffold0511 (1 HSPs)
scaffold0511 (879-975)||(795-891)
[»] chr6 (2 HSPs)
chr6 (879-975)||(18316811-18316907)
chr6 (828-883)||(18314711-18314766)
[»] scaffold0075 (1 HSPs)
scaffold0075 (343-417)||(10049-10123)
[»] scaffold0042 (3 HSPs)
scaffold0042 (528-618)||(9013-9103)
scaffold0042 (528-654)||(7081-7207)
scaffold0042 (528-654)||(14493-14619)


Alignment Details
Target: chr7 (Bit Score: 663; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 336 - 1084
Target Start/End: Original strand, 19052972 - 19053720
Alignment:
Q  336 ttggtaaactgataaactattttgagagttgacagaattgcttaaatcataattgagctgttttagaagctgacagaaagtgattatggaggattagggc 435  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19052972 ttggtgaactgataaactattttgagagttgacagaattccttaaatcataattgagctgttttagaagctgacagaaagtgattatggaggattagggc 19053071  T
Q  436 aagggcagaagtggataaattgtaattaggctgctgattgggatacaagctaggaataaactgtttttggaagaagtttggtgaaacccgtatttgggac 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19053072 aagggcagaagtggataaattgtaattaggctgctgattgggatacaagctaggaataagctgtttttggaagaagtttggtgaaacccgtatttgggac 19053171  T
Q  536 agggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccggacgttttggtacc 635  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19053172 agggctccactaaatcggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattctggacgttttggtacc 19053271  T
Q  636 agtttcattgattttggtccagatttgaagtctgtagacgatgttgaagttgggggcagaagtaggattttgtgctgaaccatgaatataagttgttttg 735  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19053272 agtttcattgattttggtccagatttgaagtctgtagacgattttgaagttgggggcagaagtaggattttgtgctgaaccatgaatataagttgttttg 19053371  T
Q  736 atgtgctaaagtttggtatcacttagcaataggtatttttaagttgctaaggaacaactatgaatataagttgttttgaagtttggtatcacttaacaag 835  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19053372 atgtgctaaagtttggtatcacttaacaataggtatttttaagttgctaaggaacaactatgaatataagttgttttgaagtttggtatcacttaacaag 19053471  T
Q  836 catcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcatgatgtatattaagattttttaagctactatgttgcagttttagaga 935  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19053472 catcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcatgatgtatattaagattttttaagctactatgttgcagttttagaga 19053571  T
Q  936 cctaaagcaatgaatatgatgtgtaccactaaattcattaagttgaaattgtgatttattttacacaaatgagtttttattcaattgtnnnnnnnnnnnn 1035  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
T  19053572 cctaaagcaatgaatatgatgtgtaccactaaattcattaagttgaaattgtgatttattttacacaaatgagtttttattcaattgtaaaaataaaaaa 19053671  T
Q  1036 nnnnnncttgagggtaggatatgaaactttgaacgggaactccacaggt 1084  Q
          ||||||||||||||||||||||||||||||||||||| |||||    
T  19053672 taaaaacttgagggtaggatatgaaactttgaacgggaactcctcaggt 19053720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 422 - 734
Target Start/End: Original strand, 25717780 - 25718092
Alignment:
Q  422 tggaggattagggcaagggcagaagtggataaattgtaattaggctgctgattgggatacaagctaggaataaactgtttttggaagaagtttggtgaaa 521  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  25717780 tggaggattagggcaagggcagatgtggataaattgtaattaggctgctgattgggatacaagctaggaataagctgtttttggaagaagtttggtgaag 25717879  T
Q  522 cccgtatttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccg 621  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25717880 cccgtatttgggacagagctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccg 25717979  T
Q  622 gacgttttggtaccagtttcattgattttggtccagatttgaagtctgtagacgatgttgaagttgggggcagaagtaggattttgtgctgaaccatgaa 721  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25717980 gacgttttcgtaccagtttcattgtttttggtccagatttgaagtctgtagacgattttgaagttgggggcagaagtaggattttgtgctgaaccatgaa 25718079  T
Q  722 tataagttgtttt 734  Q
    |||||||||||||    
T  25718080 tataagttgtttt 25718092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 70 - 311
Target Start/End: Original strand, 36717110 - 36717348
Alignment:
Q  70 acaccttatggaagtaaagttccaaaaatcatcatcgacattgagaaacttcctgctgctgaagatggtgaatcagagcttctgactcctcagaagaagc 169  Q
    ||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36717110 acaccttatggaagtaaagttccaaaaatcatcattgacattgcaaaacttcctgctgctgaagatggtgaatctgagcttctgactcctcagaagaagc 36717209  T
Q  170 agctattgcattcgattgatataattgagggtgaagttaagcaatagttgatgaaactcaaaagaacccctacagccaaaaaagcagaacatcagaaaag 269  Q
       |||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36717210 ---tattgcattcgattgatataattgagcgtgaagtgaagcaagagttgatgaaactcaagagaacccctacagccaaaaaagcagaacatcagaaaag 36717306  T
Q  270 ggtttcgaccctaatgtccatgaggtgaattgaagaagattt 311  Q
    ||||  |||| | |||||||||||||||||||||||||||||    
T  36717307 ggttaggaccttgatgtccatgaggtgaattgaagaagattt 36717348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 174; E-Value: 5e-93
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 1482237 - 1482500
Alignment:
Q  1 ctctaatccatcttcattctctgctgcttttggatcttcttcacgtgtccacaagaaa-------agttc---------ctgtggacaccttatggaagt 84  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||       | | |         ||| | |||||||||||||||    
T  1482237 ctctgatccatcttcattctctgctgcttttggatcttcttcacgtgtccacaagaaatcaccaaaatcctgcataaagctgagtacaccttatggaagt 1482336  T
Q  85 aaagttccaaaaatcatcatcgacattgagaaacttcctgctgctgaagatggtgaatcagagcttctgactcctcagaagaagcagctattgcattcga 184  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1482337 aaagttccaaaaatcatcatcgacattgcgaaacttcctgctgctgaagatggtgaatcagagcttctgactcctcagaagaagcagctattgcattcga 1482436  T
Q  185 ttgatataattgagggtgaagttaagcaatagttgatgaaactcaaaagaacccctacagccaa 248  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1482437 ttgatataattgagcgtgaagttaagcaatagttgatgaaactaaaaagaacccctacagccaa 1482500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 147; E-Value: 6e-77
Query Start/End: Original strand, 528 - 750
Target Start/End: Original strand, 17146576 - 17146798
Alignment:
Q  528 tttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccggacgtt 627  Q
    |||||||||||  | ||||||||| |||||||||  |||  |||| |||||||||||||||||||| |||||| |||||| |||||||||||||||||||    
T  17146576 tttgggacaggatttcactaaaaccgtaagaactttctcaatgtagcttggaatcaagtgatttttaatgctacggttagataacgaaattccggacgtt 17146675  T
Q  628 ttggtaccagtttcattgattttggtccagatttgaagtctgtagacgatgttgaagttgggggcagaagtaggattttgtgctgaaccatgaatataag 727  Q
    ||||||||||||||| ||||||||||||||  ||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  17146676 ttggtaccagtttcactgattttggtccagtattgaactctgtagacgattttgaatttgggggcagaagtaggattttgtgctgaaccatgaatatgag 17146775  T
Q  728 ttgttttgatgtgctaaagtttg 750  Q
    |||||||||||||||||||||||    
T  17146776 ttgttttgatgtgctaaagtttg 17146798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 828 - 975
Target Start/End: Complemental strand, 42301425 - 42301278
Alignment:
Q  828 ttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcc-tagcatgatgtatattaagattttttaagctactatgttgcag 926  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||| |||||||||||| |||||||||    
T  42301425 ttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatccttaggatgatgtatgttaaga-tttttaagctaccatgttgcag 42301327  T
Q  927 ttttagagacctaaagcaatgaatatgatgtgtaccactaaattcatta 975  Q
    |||||||||| ||||||||| |||||||||||| |||||||||||||||    
T  42301326 ttttagagacttaaagcaataaatatgatgtgtgccactaaattcatta 42301278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 36717025 - 36717078
Alignment:
Q  1 ctctaatccatcttcattctctgctgcttttggatcttcttcacgtgtccacaa 54  Q
    |||| ||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  36717025 ctctgatccatcttcattctctgctgctattggatcttcttcacgcgtccacaa 36717078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 528 - 630
Target Start/End: Original strand, 15560925 - 15561027
Alignment:
Q  528 tttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccggacgtt 627  Q
    |||||||||||||| |||||||| ||||||||||| |||  |||||||  |||||| | | || |||  |||||||||| ||||||||||| | ||||||    
T  15560925 tttgggacagggcttcactaaaatggtaagaactctctctgtgtaactctgaatcaggaggttattgtcgctatggttacctaacgaaatttccgacgtt 15561024  T
Q  628 ttg 630  Q
    |||    
T  15561025 ttg 15561027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 314
Target Start/End: Original strand, 1482586 - 1482623
Alignment:
Q  277 accctaatgtccatgaggtgaattgaagaagatttgaa 314  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  1482586 accctaatgtccatgaggtgaattgaaaaagatttgaa 1482623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 336 - 734
Target Start/End: Original strand, 29684721 - 29685109
Alignment:
Q  336 ttggtaaactgataaactattttgagagttgacagaattgcttaaatcataattgagctgttttagaagctgacagaaagtgattatggaggattagggc 435  Q
    ||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||          ||||||||| ||||||||||||    
T  29684721 ttggtgaactaataaactattttgggagttgacagaattgcttaaatcataattgagctgttttagaa----------agtgattatagaggattagggc 29684810  T
Q  436 aagggcagaagtggataaattgtaattaggctgctgattgggatacaagctaggaataaactgtttttggaagaagtttggtgaaacccgtatttgggac 535  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||    
T  29684811 aagggcagaagtggataaattgtaattaggctgctgattcagatacaagctaggaataagctgtttttggaagaagtttggtgaaaaacgtatttgggac 29684910  T
Q  536 agggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccggacgttttggtacc 635  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29684911 agggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagataacgaaattccggacgttttggtacc 29685010  T
Q  636 agtttcattgattttggtccagatttgaagtctgtagacgatgttgaagttgggggcagaagtaggattttgtgctgaaccatgaatataagttgtttt 734  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29685011 agtttcattgattttggtccagatttgaagtctgtagacgattttgaagttgggggcagaagtaggattttgtgctgaaccatgaatataagttgtttt 29685109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 528 - 643
Target Start/End: Original strand, 23307424 - 23307539
Alignment:
Q  528 tttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccggacgtt 627  Q
    |||||||||||||| |||||||||||||||||||| |||||||| ||||  ||||| ||||  |||| | |||||||||||||||||||| || ||| ||    
T  23307424 tttgggacagggcttcactaaaacggtaagaactctctccctgttacttcaaatcatgtgaactttgtttctatggttagctaacgaaatgcccgacatt 23307523  T
Q  628 ttggtaccagtttcat 643  Q
    |||||||| |||||||    
T  23307524 ttggtaccggtttcat 23307539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 222; Significance: 1e-121; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-121
Query Start/End: Original strand, 798 - 1023
Target Start/End: Complemental strand, 50809135 - 50808910
Alignment:
Q  798 aatataagttgttttgaagtttggtatcacttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcatgatgtata 897  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50809135 aatataagttgttttgaagtttggtatcacttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcatgatgtata 50809036  T
Q  898 ttaagattttttaagctactatgttgcagttttagagacctaaagcaatgaatatgatgtgtaccactaaattcattaagttgaaattgtgatttatttt 997  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50809035 ttaagattttttaagctactatgttgcagttttacagacctaaagcaatgaatatgatgtgtaccactaaattcattaagttgaaattgtgatttatttt 50808936  T
Q  998 acacaaatgagtttttattcaattgt 1023  Q
    ||||||||||||||||||||||||||    
T  50808935 acacaaatgagtttttattcaattgt 50808910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-121
Query Start/End: Original strand, 798 - 1023
Target Start/End: Original strand, 50866727 - 50866952
Alignment:
Q  798 aatataagttgttttgaagtttggtatcacttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcatgatgtata 897  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50866727 aatataagttgttttgaagtttggtatcacttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcatgatgtata 50866826  T
Q  898 ttaagattttttaagctactatgttgcagttttagagacctaaagcaatgaatatgatgtgtaccactaaattcattaagttgaaattgtgatttatttt 997  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50866827 ttaagattttttaagctactatgttgcagttttacagacctaaagcaatgaatatgatgtgtaccactaaattcattaagttgaaattgtgatttatttt 50866926  T
Q  998 acacaaatgagtttttattcaattgt 1023  Q
    ||||||||||||||||||||||||||    
T  50866927 acacaaatgagtttttattcaattgt 50866952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 528 - 750
Target Start/End: Complemental strand, 22806911 - 22806685
Alignment:
Q  528 tttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccggacgtt 627  Q
    |||||||||||||||||||||||| |||||||||  ||| |||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||    
T  22806911 tttgggacagggctccactaaaacagtaagaactttctctctgtaacttggaatcaagtgatttttaatgctatggttagataacgaaattacggacgtt 22806812  T
Q  628 ttggtaccagtttcattgattttggtccagatttgaagtctgtagacgatgttgaagttgggggcagaagtaggat------tttgtgctgaaccatgaa 721  Q
    ||||||||||||| ||||| ||||| ||||  |||||||||| ||||||| ||||||||||||||||||||| | |      ||||||||||||||||||    
T  22806811 ttggtaccagttttattgaatttggcccagtattgaagtctggagacgattttgaagttgggggcagaagtatgttttgtgctttgtgctgaaccatgaa 22806712  T
Q  722 tataagttgttttgatgtgctaaagtttg 750  Q
    ||| |||||  ||||||||||||||||||    
T  22806711 tatgagttg--ttgatgtgctaaagtttg 22806685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 828 - 903
Target Start/End: Complemental strand, 22761560 - 22761485
Alignment:
Q  828 ttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcatgatgtatattaaga 903  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22761560 ttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcatgatgtatgttaaga 22761485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 528 - 643
Target Start/End: Original strand, 380097 - 380212
Alignment:
Q  528 tttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccggacgtt 627  Q
    |||||||||||||| ||| |||||||||||||||| ||  |||||||||  ||||| ||||  |||| ||||||||||||||||||||||||| ||| ||    
T  380097 tttgggacagggcttcaccaaaacggtaagaactctcttgctgtaacttcaaatcacgtgaactttgttgctatggttagctaacgaaattcccgacatt 380196  T
Q  628 ttggtaccagtttcat 643  Q
    |||||| | |||||||    
T  380197 ttggtatcggtttcat 380212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 528 - 643
Target Start/End: Original strand, 3555755 - 3555870
Alignment:
Q  528 tttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccggacgtt 627  Q
    |||||||||||||| | ||||||||| |||||||| |||||||||||||  ||||| ||||  |||| ||||||||||||| |||||||| || ||| ||    
T  3555755 tttgggacagggcttcgctaaaacgggaagaactctctccctgtaacttcaaatcaggtgaactttgttgctatggttagccaacgaaatgcccgacatt 3555854  T
Q  628 ttggtaccagtttcat 643  Q
    ||| |||| |||||||    
T  3555855 ttgataccggtttcat 3555870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1042 - 1084
Target Start/End: Complemental strand, 50808892 - 50808850
Alignment:
Q  1042 cttgagggtaggatatgaaactttgaacgggaactccacaggt 1084  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||    
T  50808892 cttgaggataggatatgaaactttgaaggggaactcctcaggt 50808850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1042 - 1084
Target Start/End: Original strand, 50866970 - 50867012
Alignment:
Q  1042 cttgagggtaggatatgaaactttgaacgggaactccacaggt 1084  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||    
T  50866970 cttgaggataggatatgaaactttgaaggggaactcctcaggt 50867012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 136; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 888 - 1023
Target Start/End: Complemental strand, 2685793 - 2685658
Alignment:
Q  888 atgatgtatattaagattttttaagctactatgttgcagttttagagacctaaagcaatgaatatgatgtgtaccactaaattcattaagttgaaattgt 987  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2685793 atgatgtatattaagattttttaagctactatgttgcagttttagagacctaaagcaatgaatatgatgtgtaccactaaattcattaagttgaaattgt 2685694  T
Q  988 gatttattttacacaaatgagtttttattcaattgt 1023  Q
    ||||||||||||||||||||||||||||||||||||    
T  2685693 gatttattttacacaaatgagtttttattcaattgt 2685658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 2e-70; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 888 - 1023
Target Start/End: Complemental strand, 45009217 - 45009082
Alignment:
Q  888 atgatgtatattaagattttttaagctactatgttgcagttttagagacctaaagcaatgaatatgatgtgtaccactaaattcattaagttgaaattgt 987  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45009217 atgatgtatattaagattttttaagctactatgttgcagttttagagacctaaagcaatgaatatgatgtgtaccactaaattcattaagttgaaattgt 45009118  T
Q  988 gatttattttacacaaatgagtttttattcaattgt 1023  Q
    ||||||||||||||||||||||||||||||||||||    
T  45009117 gatttattttacacaaatgagtttttattcaattgt 45009082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 528 - 643
Target Start/End: Complemental strand, 22828406 - 22828294
Alignment:
Q  528 tttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccggacgtt 627  Q
    |||||||||| ||| |||||||||||||| |||||  || ||||||||||||   ||||||  |||  ||||||||||||||||| ||||||| ||| ||    
T  22828406 tttgggacagcgcttcactaaaacggtaataactctttctctgtaacttgga---aagtgaactttattgctatggttagctaacaaaattcccgacatt 22828310  T
Q  628 ttggtaccagtttcat 643  Q
    || ||||| |||||||    
T  22828309 ttcgtaccggtttcat 22828294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 500 - 536
Target Start/End: Original strand, 8032397 - 8032433
Alignment:
Q  500 ttttggaagaagtttggtgaaacccgtatttgggaca 536  Q
    ||||||||||||||||||||||||||||||| |||||    
T  8032397 ttttggaagaagtttggtgaaacccgtatttaggaca 8032433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 8e-67; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 396 - 541
Target Start/End: Original strand, 22914060 - 22914205
Alignment:
Q  396 ttttagaagctgacagaaagtgattatggaggattagggcaagggcagaagtggataaattgtaattaggctgctgattgggatacaagctaggaataaa 495  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  22914060 ttttagaagctgatagaaagtgattatggaggattagggcaagggcagaagtggataaattgtaattaggctgctgattgggatacaagataggaataag 22914159  T
Q  496 ctgtttttggaagaagtttggtgaaacccgtatttgggacagggct 541  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||    
T  22914160 ctgtttttggaagaagtttggtgaaacccgtatttgggatagggct 22914205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 1e-65; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 888 - 1023
Target Start/End: Original strand, 5477521 - 5477656
Alignment:
Q  888 atgatgtatattaagattttttaagctactatgttgcagttttagagacctaaagcaatgaatatgatgtgtaccactaaattcattaagttgaaattgt 987  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5477521 atgatgtacattaagattttttaagctactatgttgcagttttagagacctaaagcaatgaatatgatgtgtgccactaaattcattaagttgaaattgt 5477620  T
Q  988 gatttattttacacaaatgagtttttattcaattgt 1023  Q
    ||||||||||||||||||||||||||||||||||||    
T  5477621 gatttattttacacaaatgagtttttattcaattgt 5477656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 528 - 642
Target Start/End: Original strand, 14801344 - 14801458
Alignment:
Q  528 tttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccggacgtt 627  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| | |||| ||||| ||||| ||    
T  14801344 tttgggacagggctccactaaaatggtaagaactctctccctgtaactcggaatcaagtgatttttgatgctatggttcgataacaaaattacggacatt 14801443  T
Q  628 ttggtaccagtttca 642  Q
    ||||||||| |||||    
T  14801444 ttggtaccattttca 14801458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 121; Significance: 2e-61; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 828 - 984
Target Start/End: Complemental strand, 93376 - 93220
Alignment:
Q  828 ttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcatgatgtatattaagattttttaagctactatgttgcagt 927  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| ||||| |||    
T  93376 ttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcacgatgtatgttcagattttttaagctactgtgttgtagt 93277  T
Q  928 tttagagacctaaagcaatgaatatgatgtgtaccactaaattcattaagttgaaat 984  Q
    ||||||||| ||||||||| |||||||||||| ||||||||||||||||| ||||||    
T  93276 tttagagacttaaagcaataaatatgatgtgtcccactaaattcattaagctgaaat 93220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 528 - 642
Target Start/End: Complemental strand, 38383 - 38269
Alignment:
Q  528 tttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccggacgtt 627  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| | |||| ||||| ||||| ||    
T  38383 tttgggacagggctccactaaaatggtaagaactctctccctgtaactcggaatcaagtgatttttgatgctatggttcgataacaaaattacggacatt 38284  T
Q  628 ttggtaccagtttca 642  Q
    ||||||||| |||||    
T  38283 ttggtaccattttca 38269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 77; Significance: 4e-35; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 879 - 975
Target Start/End: Original strand, 795 - 891
Alignment:
Q  879 aatcctagcatgatgtatattaagattttttaagctactatgttgcagttttagagacctaaagcaatgaatatgatgtgtaccactaaattcatta 975  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  795 aatcctagcatgatgtatgttaagattttttaagctaccatgttgccgttttagagacttaaagcaataaatatgatgtgtaccactaaattcatta 891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 4e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 879 - 975
Target Start/End: Original strand, 18316811 - 18316907
Alignment:
Q  879 aatcctagcatgatgtatattaagattttttaagctactatgttgcagttttagagacctaaagcaatgaatatgatgtgtaccactaaattcatta 975  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  18316811 aatcctagcatgatgtatgttaagattttttaagctaccatgttgccgttttagagacttaaagcaataaatatgatgtgtaccactaaattcatta 18316907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 828 - 883
Target Start/End: Original strand, 18314711 - 18314766
Alignment:
Q  828 ttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcc 883  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18314711 ttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcc 18314766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 67; Significance: 3e-29; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 343 - 417
Target Start/End: Complemental strand, 10123 - 10049
Alignment:
Q  343 actgataaactattttgagagttgacagaattgcttaaatcataattgagctgttttagaagctgacagaaagtg 417  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10123 actgataaactattttgggagttgacagaattgcttaaatcataattgagctgttttagaagctgatagaaagtg 10049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 39; Significance: 0.000000000002; HSPs: 3)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 528 - 618
Target Start/End: Original strand, 9013 - 9103
Alignment:
Q  528 tttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaatt 618  Q
    |||||||| ||||| | |||||| ||||||||||| ||| ||||||||  |||||| ||| || ||| | |||||||||||||||||||||    
T  9013 tttgggactgggcttcgctaaaatggtaagaactctctctctgtaactccgaatcaggtggttcttgtttctatggttagctaacgaaatt 9103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 528 - 654
Target Start/End: Original strand, 7081 - 7207
Alignment:
Q  528 tttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccggacgtt 627  Q
    |||||||| ||||| | |||||| ||| | ||||| ||| ||||||||  |||||| ||| || ||| | ||||||||||||||||||||| | | || |    
T  7081 tttgggaccgggcttcgctaaaatggttataactctctctctgtaactccgaatcaggtggttcttgtttctatggttagctaacgaaatttccgtcgct 7180  T
Q  628 ttggtaccagtttcattgattttggtc 654  Q
    |||| ||| |||||||  |||||||||    
T  7181 ttggcaccggtttcatgaattttggtc 7207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 528 - 654
Target Start/End: Original strand, 14493 - 14619
Alignment:
Q  528 tttgggacagggctccactaaaacggtaagaactcactccctgtaacttggaatcaagtgatttttgatgctatggttagctaacgaaattccggacgtt 627  Q
    |||||||| ||||| | |||||| ||| | ||||| ||| ||||||||  |||||| ||| || ||| | ||||||||||||||||||||| | | || |    
T  14493 tttgggaccgggcttcgctaaaatggttataactctctctctgtaactccgaatcaggtggttcttgtttctatggttagctaacgaaatttccgtcgct 14592  T
Q  628 ttggtaccagtttcattgattttggtc 654  Q
    |||| ||| |||||||  |||||||||    
T  14593 ttggcaccggtttcatgaattttggtc 14619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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