View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19511_low_10 (Length: 375)
Name: NF19511_low_10
Description: NF19511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19511_low_10 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 142 - 375
Target Start/End: Complemental strand, 3430726 - 3430496
Alignment:
| Q |
142 |
gtgtatgttgtaatccgcataaggacatcctatatnnnnnnncatcattatctatgtattaaaaaatatttgttattcctttcatacttggttctataac |
241 |
Q |
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| T |
3430726 |
gtgtatgttgtaatccgcataaggacatcctatataaaaaaacatcattatctatgtattaaaaaatatttgttattcctttcatacttggttctataac |
3430627 |
T |
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| Q |
242 |
atcgttattcttacataagaagaattaagaggagtgggacttgactagttgctaccattctcaatatcatcataattcataaccaccattcttatttctc |
341 |
Q |
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| T |
3430626 |
atcgttattcttacataagaa---ttaagaggagtgggacttgactagttgctaccattctcaatatcatcataattcataaccaccattcttatttctc |
3430530 |
T |
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| Q |
342 |
ttctcatctcccatttatccattccaaataaact |
375 |
Q |
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| T |
3430529 |
ttctcatctcccatttatccattccaaataaact |
3430496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 3430862 - 3430791
Alignment:
| Q |
11 |
attatactagta--agaagtgtttttactaccaataaagtcagaattagagttttaaattgtaaaaacgtca |
80 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3430862 |
attatactagtataagaagtgtttttactaccaataaagtcagaattagagttttaaattgtaaaaacgtca |
3430791 |
T |
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