View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19511_low_16 (Length: 294)
Name: NF19511_low_16
Description: NF19511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19511_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 15883628 - 15883356
Alignment:
| Q |
18 |
aatagtacaaaatacactaatgttgatttgacaattatattataatattaaaaatatgtaacacatagattatggttaaagattttctccacttgtctca |
117 |
Q |
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| T |
15883628 |
aatagtacaaaatacactaatgttgatttgacaattatattataatattaaaaatatgtaacacatagattatggttaaagattttctccacttgtctca |
15883529 |
T |
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| Q |
118 |
tataattaaacaacaaaacatacaagattataattaattcaacttgtctgatgagtgaggcactgaagaatattcacctgcatttgcaaacaacttacat |
217 |
Q |
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| T |
15883528 |
tataattaaacaacaaaacatacaagattataattaattcaacttgtctgatgagtgaggcactgaagaatattcacctgcatttgcaaacaacttacat |
15883429 |
T |
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| Q |
218 |
agctctctaattcattcaccatttcctcatcacatataatctcttctccacctggtatcaatattcttcgaca |
290 |
Q |
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| T |
15883428 |
agctctctaattcattcaccatttcctcatcacatataatctcttctcctcctggtatcaattttcttagaca |
15883356 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 278
Target Start/End: Original strand, 53071241 - 53071335
Alignment:
| Q |
181 |
tgaagaatattcacctgcatttgcaaacaacttacatagctctctaattcattcaccatttcctcatcacatataatctcttctccacctggtatcaa |
278 |
Q |
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||||||| ||||||||||||||| ||||| |||| ||| || ||||||||||| || | || |||||||| ||| ||||||||||| |||||||| |
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| T |
53071241 |
tgaagaacattcacctgcatttgtaaacatcttatataactttctaattcattaacaacttgttcatcaca---aatatcttctccaccaggtatcaa |
53071335 |
T |
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