View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19511_low_18 (Length: 256)
Name: NF19511_low_18
Description: NF19511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19511_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 2372785 - 2373015
Alignment:
| Q |
18 |
ttgaaaataagcttcattggtcaatcctctaataacattccttagtagattttatactcttaatatttcaattatatatttacctatcgctttcaattgc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2372785 |
ttgaaaataagcttcattggtcaatcctctaataacattccttagtagattttatactcttaatatttcaattatatatttacctatcgctttcaattgc |
2372884 |
T |
|
| Q |
118 |
agaaaatctctatttttctataatagatatgggtctcatgcaatctcataaacgcgatatgacaagtgaagttaaactttcaccataaaaaattcaacaa |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2372885 |
agaaaacctctatttttctataatagatatgggtctcatgcaatctcataaacgcgatatgacaagtgaagttaaactttcaccataaaaaattcaacaa |
2372984 |
T |
|
| Q |
218 |
gatcaaacacataaaataagtacagtataat |
248 |
Q |
| |
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|||||||||||||||||||||||| |||||| |
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|
| T |
2372985 |
gatcaaacacataaaataagtacaatataat |
2373015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 91 - 239
Target Start/End: Original strand, 2373014 - 2373161
Alignment:
| Q |
91 |
atatatttacctatcgctttcaattgcagaaaatctctatttttctataatagatatgggtctcatgcaatctcataaacgcgatatgacaagtgaagtt |
190 |
Q |
| |
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||||||| |||| || |||||||||| ||||| |||||||||| | ||||||||||||||| |||||||||||||||||| || || |||||||||| |
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| T |
2373014 |
atatattcacctgtcactttcaattgttgaaaacctctattttt-tgtaatagatatgggtccgatgcaatctcataaacgcaatgtgctaagtgaagtt |
2373112 |
T |
|
| Q |
191 |
aaactttcaccataaaaaattcaacaagatcaaacacataaaataagta |
239 |
Q |
| |
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||||||| ||| |||| ||||||||||| ||||||||||||||||||| |
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|
| T |
2373113 |
aaacttttaccgtaaattattcaacaagaccaaacacataaaataagta |
2373161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 22 - 248
Target Start/End: Original strand, 36170828 - 36171054
Alignment:
| Q |
22 |
aaataagcttcattggtcaatcctctaataacattccttagtagattttatactcttaatatttcaattatatatttacctatcgctttcaattgcagaa |
121 |
Q |
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|
||||||| ||| ||||| | |||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36170828 |
aaataagtttcgttggttagtcctctaataactttccttagtcgattttatactcttcatatttcaattatatatttacctataactttcaattgcagaa |
36170927 |
T |
|
| Q |
122 |
aatctctatttttctataatagatatgggtctcatgcaatctcataaacgcgatatgacaagtgaagttaaactttcaccataaaaaattcaacaagatc |
221 |
Q |
| |
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|| ||||||||||||||||||||||||||||| ||||||||| ||||| || ||||||||||||| ||||| ||||||||| || |||||||||||||| |
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|
| T |
36170928 |
aacctctatttttctataatagatatgggtctgatgcaatcttataaatgcaatatgacaagtgatattaaattttcaccatgaacaattcaacaagatc |
36171027 |
T |
|
| Q |
222 |
aaacacataaaataagtacagtataat |
248 |
Q |
| |
|
|||||||||||||||||||| |||||| |
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|
| T |
36171028 |
aaacacataaaataagtacaatataat |
36171054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 91 - 239
Target Start/End: Original strand, 36171053 - 36171195
Alignment:
| Q |
91 |
atatatttacctatcgctttcaattgcagaaaatctctatttttctataatagatatgggtctcatgcaatctcataaacgcgatatgacaagtgaagtt |
190 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||| | ||| ||||| |
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|
| T |
36171053 |
atatatttacctatcattttcaattgcagaaaatctctatttttctgtaatagataggggtctgatgcaatctcataaacgcattgtga------aagtt |
36171146 |
T |
|
| Q |
191 |
aaactttcaccataaaaaattcaacaagatcaaacacataaaataagta |
239 |
Q |
| |
|
||| |||||||||||| |||||| ||||||||||||||||||||||||| |
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|
| T |
36171147 |
aaattttcaccataaacaattcatcaagatcaaacacataaaataagta |
36171195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 7e-64; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 49801229 - 49800999
Alignment:
| Q |
17 |
attgaaaataagcttcattggtcaatcctctaataacattccttagtagattttatactcttaatatttcaattatatatttacctatcgctttcaattg |
116 |
Q |
| |
|
|||| ||||||||||||||||| | |||||||||||| |||| |||| |||| |||||||| ||||||||||||||||||| ||||| |||||||||| |
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|
| T |
49801229 |
attggaaataagcttcattggttactcctctaataactttccctagtctattt-atactcttcttatttcaattatatatttatctatcactttcaattg |
49801131 |
T |
|
| Q |
117 |
cagaaaatctctatttttctataatagatatgggtctcatgcaatctcataaacgcgatatgacaagtgaagttaaactttcaccataaaaaattcaaca |
216 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||| | | ||||||||||||||| | || |||||| |||||||||| |||||||||||| |||||||| |
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|
| T |
49801130 |
cataaaacctctatttttctataatagatatggttttgatgcaatctcataaatccaatgtgacaactgaagttaaattttcaccataaactattcaaca |
49801031 |
T |
|
| Q |
217 |
agatcaaacacataaaataagtacagtataat |
248 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |
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|
| T |
49801030 |
agatcaaacacataaaataagtacaatataat |
49800999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 91 - 239
Target Start/End: Complemental strand, 49801000 - 49800853
Alignment:
| Q |
91 |
atatatttacctatcgctttcaattgcagaaaatctctatttttctataatagatatgggtctcatgcaatctcataaacgcgatatgacaagtgaagtt |
190 |
Q |
| |
|
||||||||| | ||| ||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||| ||| ||| |||||||||| |
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|
| T |
49801000 |
atatatttatcgatcactttcaattgcagaaaacctctatttttctgtaatagatatgggtctgatgcaatctcataaacttgatgtgataagtgaagtt |
49800901 |
T |
|
| Q |
191 |
aaactttcaccataaaaaattcaacaagatcaaacacataaaataagta |
239 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49800900 |
aaa-ttttaccataaaaaattcaacaagatcaaacacataaaataagta |
49800853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 49808528 - 49808471
Alignment:
| Q |
148 |
gggtctcatgcaatctcataaacgcgatatgacaagtgaagttaaactttcaccataa |
205 |
Q |
| |
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|||||| |||||||||||||||| | || ||| ||||||||||||| ||||||||||| |
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|
| T |
49808528 |
gggtctgatgcaatctcataaacacaatgtgataagtgaagttaaattttcaccataa |
49808471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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