View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19511_low_19 (Length: 251)
Name: NF19511_low_19
Description: NF19511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19511_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 233
Target Start/End: Complemental strand, 35171779 - 35171551
Alignment:
| Q |
5 |
atgtcgaagaatatcccaacaaaatggaaaggaaaatgtcaagcaggacaagatttcaacacttctatgtgtaacttgaaattaattggagctagatatt |
104 |
Q |
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| T |
35171779 |
atgtcgaaaaacatcccaacaaaatggaaaggaaaatgtcaagcaggacaagatttcaacacttctatgtgtaacttgaaattaattggagctagatatt |
35171680 |
T |
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| Q |
105 |
tcaacaaaggtgtgattgcatcaaaaccaaatgtcaaaatcagtatgaactcagctagagacacacaaggacatggtagtcacacatcatcaacggcagc |
204 |
Q |
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| T |
35171679 |
tcaacaaaggtgtgattgcatcaaaaccaaatgtcaaaatcagtatgaactcagctagagacacacaaggacatggtagtcacacatcatcaacggcagc |
35171580 |
T |
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| Q |
205 |
cggaaactatgtcaaagatgcttctttct |
233 |
Q |
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| T |
35171579 |
cggaaactatgtcaaagatgcatctttct |
35171551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 30098737 - 30098909
Alignment:
| Q |
26 |
aaatggaaaggaaaatgtcaagcaggacaagatttcaacacttctatgtgtaacttgaaattaattggagctagatatttcaacaaaggtgtgattgcat |
125 |
Q |
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| T |
30098737 |
aaatggaaaggaacatgtgaaactggccaagaattcaatacctcaatgtgtaacttcaaattgattggagctagatatttcaacaaaggtgtgattgctt |
30098836 |
T |
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| Q |
126 |
caaaaccaaatgtcaaaatcagtatgaactcagctagagacacacaaggacatggtagtcacacatcatcaac |
198 |
Q |
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| T |
30098837 |
caaatccaaatgttacaatcagcatgaactcagctagagacactatagggcatggaactcacacatcatcaac |
30098909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 71 - 167
Target Start/End: Complemental strand, 30092084 - 30091988
Alignment:
| Q |
71 |
atgtgtaacttgaaattaattggagctagatatttcaacaaaggtgtgattgcatcaaaaccaaatgtcaaaatcagtatgaactcagctagagaca |
167 |
Q |
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||||| ||||| ||| | ||||||||||||| ||||||||||||||||||||| ||||| |||||||| | |||||| ||||||||||||||||||| |
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| T |
30092084 |
atgtgcaacttcaaactgattggagctagatctttcaacaaaggtgtgattgcttcaaatccaaatgttagaatcaggatgaactcagctagagaca |
30091988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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