View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19511_low_3 (Length: 717)

Name: NF19511_low_3
Description: NF19511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19511_low_3
NF19511_low_3
[»] chr4 (12 HSPs)
chr4 (86-708)||(42769567-42770167)
chr4 (380-608)||(42743797-42744031)
chr4 (380-608)||(42753156-42753390)
chr4 (384-608)||(42762778-42763002)
chr4 (457-608)||(42717169-42717320)
chr4 (380-608)||(42734482-42734716)
chr4 (629-704)||(42762700-42762775)
chr4 (106-154)||(42733416-42733464)
chr4 (378-415)||(42717371-42717408)
chr4 (104-154)||(42744263-42744313)
chr4 (104-154)||(42753622-42753672)
chr4 (636-697)||(42734726-42734787)
[»] chr5 (2 HSPs)
chr5 (442-601)||(23040511-23040670)
chr5 (380-425)||(23040443-23040488)
[»] chr3 (1 HSPs)
chr3 (113-153)||(37110521-37110561)


Alignment Details
Target: chr4 (Bit Score: 540; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 86 - 708
Target Start/End: Complemental strand, 42770167 - 42769567
Alignment:
Q  86 ctctaatggaatattgtatgacttatgataggtgtttggcctgaatcaaagagctttagcgatgaaggagtgggtccagttccaaccagatggcgtggaa 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42770167 ctctaatggaatattgtatgacttatgataggtgtttggcctgaatcaaagagctttagcgatgaaggagtgggtccagttccaaccagatggcgtggaa 42770068  T
Q  186 tttgcgatgttgacatagataatactgataaatttaaatgcaacaggttaatcttgttatatactcgtatttatctaatgagcatctttttgttaaaagt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42770067 tttgcgatgttgacatagataatactgataaatttaaatgcaacaggttaatcttgttatatactcgtatttatctaatgagcatctttttgttaaaagt 42769968  T
Q  286 aacacaatgttatgcttctgatacatatatagtttacacataatacctaatttttcactctaactccattattatattatttgttcatgatatataggaa 385  Q
                          |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42769967 ----------------------acatatatagtttacacataatacctaatttttcactctaactccatttttatattatttgttcatgatatataggaa 42769890  T
Q  386 gctaattggagcaagatatttttacaaaggctatttggcagatgctggtaaatccacaaatgtaacattccatagtgcacgcgactttgatggtcatggt 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769889 gctaattggagcaagatatttttacaaaggctatttggcagatgctggtaaatccacaaatgtaacattccatagtgcacgcgactttgatggtcatggt 42769790  T
Q  486 tcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacgag 585  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769789 tcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacgag 42769690  T
Q  586 ttgcggcctataaggtatgttggccaccgcttgctgtaggcggtggatgctatgaagcggacattttggctggtttcgaagctgccatacttgacggtgt 685  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42769689 ttgcggcctataaggtatgttggccaccgcttgctgtgggcggtggatgctatgaagcagacattttggctggtttcgaagctgccatacttgacggtgt 42769590  T
Q  686 tgatgtgatttcggcgtctgtgg 708  Q
    |||||||||||||||||||||||    
T  42769589 tgatgtgatttcggcgtctgtgg 42769567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 380 - 608
Target Start/End: Complemental strand, 42744031 - 42743797
Alignment:
Q  380 taggaagctaattggagcaagatatttttacaaaggctatttggcaga------tgctggtaaatccacaaatgtaacattccatagtgcacgcgacttt 473  Q
    ||||||||| |||||||||||||||||| ||||||||||| ||||||       | ||  || |  | |||||| ||||||| |||||||||| ||||||    
T  42744031 taggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcctattagaaacccaaatgaaacattcaatagtgcacgtgacttt 42743932  T
Q  474 gatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcac 573  Q
    || |||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||    ||||||||||||||||||||||    
T  42743931 gaaggtcatggttcacatactttatcaactgctggaggaaatttcgttgccaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcac 42743832  T
Q  574 ctaacgcacgagttgcggcctataaggtatgttgg 608  Q
    | || ||||||||||| ||||||||||| ||||||    
T  42743831 caaaagcacgagttgcagcctataaggtttgttgg 42743797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 380 - 608
Target Start/End: Complemental strand, 42753390 - 42753156
Alignment:
Q  380 taggaagctaattggagcaagatatttttacaaaggctatttggcaga------tgctggtaaatccacaaatgtaacattccatagtgcacgcgacttt 473  Q
    ||||||||| |||||||||||||||||| ||||||||||| ||||||       | ||  || |  | |||||| ||||||| |||||||||| ||||||    
T  42753390 taggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcctattagaaacccaaatgaaacattcaatagtgcacgtgacttt 42753291  T
Q  474 gatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcac 573  Q
    || |||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||    ||||||||||||||||||||||    
T  42753290 gaaggtcatggttcacatactttatcaactgctggaggaaatttcgttgccaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcac 42753191  T
Q  574 ctaacgcacgagttgcggcctataaggtatgttgg 608  Q
    | || ||||||||||| ||||||||||| ||||||    
T  42753190 caaaagcacgagttgcagcctataaggtttgttgg 42753156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 384 - 608
Target Start/End: Complemental strand, 42763002 - 42762778
Alignment:
Q  384 aagctaattggagcaagatatttttacaaaggctatttggcagatgctggtaaatccacaaatgtaacattccatagtgcacgcgactttgatggtcatg 483  Q
    ||||| |||||||||||||||||||  ||||||| | ||||| || ||  || | ||| ||||||| |  | ||||||||||| ||   ||| |||||||    
T  42763002 aagcttattggagcaagatatttttttaaaggctttctggcaaatccttatagagccaaaaatgtatcgcttcatagtgcacgggatagtgaaggtcatg 42762903  T
Q  484 gttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacg 583  Q
    ||||||| ||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||    ||||||||||||||||||||||| || |||||    
T  42762902 gttcacacactttatcaactgctggaggaaatttcgttgctaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacg 42762803  T
Q  584 agttgcggcctataaggtatgttgg 608  Q
    |||||| ||||||||||| ||||||    
T  42762802 agttgcagcctataaggtttgttgg 42762778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 457 - 608
Target Start/End: Complemental strand, 42717320 - 42717169
Alignment:
Q  457 atagtgcacgcgactttgatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaac 556  Q
    |||||||||| ||| |||||||||||||| |||||||||||||||| || ||||||||||||||||| |||||||||||||||||| |||||   |||||    
T  42717320 atagtgcacgtgacattgatggtcatggtacacatactttatcaactgccggaggaaattttgttgctaatgcaagtgtatttggctatggcaatggaac 42717221  T
Q  557 agcaagtggtggatcacctaacgcacgagttgcggcctataaggtatgttgg 608  Q
    ||||||||||||||| || || ||||||||||  ||||||||||| ||||||    
T  42717220 agcaagtggtggatcgccaaaagcacgagttgtagcctataaggtttgttgg 42717169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 380 - 608
Target Start/End: Original strand, 42734482 - 42734716
Alignment:
Q  380 taggaagctaattggagcaagatatttttacaaaggctatttggcaga------tgctggtaaatccacaaatgtaacattccatagtgcacgcgacttt 473  Q
    ||||||||| ||||| |||||||||||||||||||||||| ||||||       | ||  || |  | |||||| ||||||| ||||||| || |||  |    
T  42734482 taggaagcttattggcgcaagatatttttacaaaggctatatggcagtgccaattcctattagaaacccaaatgaaacattcaatagtgcccgtgacagt 42734581  T
Q  474 gatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcac 573  Q
    |  |||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||| ||||    |||||||||||||||||||| |    
T  42734582 gtaggtcatggttcacatactttatcaactgctggaggaaattttgttgctaatgcaagtgtatttggctatggaaatggaacagcaagtggtggatcgc 42734681  T
Q  574 ctaacgcacgagttgcggcctataaggtatgttgg 608  Q
    | || ||||||||| | ||||||||||| ||||||    
T  42734682 caaaagcacgagtttccgcctataaggtttgttgg 42734716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 629 - 704
Target Start/End: Complemental strand, 42762775 - 42762700
Alignment:
Q  629 tggatgctatgaagcggacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtct 704  Q
    |||||| ||||| || ||||||||||||||||| ||||||||||||  ||| |||||||||||| |||||| ||||    
T  42762775 tggatgttatgatgcagacattttggctggttttgaagctgccataagtgatggtgttgatgtgctttcggtgtct 42762700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 42733416 - 42733464
Alignment:
Q  106 acttatgataggtgtttggcctgaatcaaagagctttagcgatgaagga 154  Q
    ||||||||||||||||||||| ||||||||||| ||||| |||||||||    
T  42733416 acttatgataggtgtttggccagaatcaaagagttttagtgatgaagga 42733464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 378 - 415
Target Start/End: Complemental strand, 42717408 - 42717371
Alignment:
Q  378 tataggaagctaattggagcaagatatttttacaaagg 415  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  42717408 tataggaagcttattggagcaagatatttttacaaagg 42717371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 42744313 - 42744263
Alignment:
Q  104 tgacttatgataggtgtttggcctgaatcaaagagctttagcgatgaagga 154  Q
    |||||||||| |||||||||||| ||||| ||||| ||||| |||||||||    
T  42744313 tgacttatgacaggtgtttggccagaatctaagagttttagtgatgaagga 42744263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 42753672 - 42753622
Alignment:
Q  104 tgacttatgataggtgtttggcctgaatcaaagagctttagcgatgaagga 154  Q
    |||||||||| |||||||||||| ||||| ||||| ||||| |||||||||    
T  42753672 tgacttatgacaggtgtttggccagaatctaagagttttagtgatgaagga 42753622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 697
Target Start/End: Original strand, 42734726 - 42734787
Alignment:
Q  636 tatgaagcggacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttc 697  Q
    ||||| || || |||||||||||||| ||||||||||||  ||| |||||||||||| ||||    
T  42734726 tatgatgcagatattttggctggttttgaagctgccataagtgatggtgttgatgtgctttc 42734787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 442 - 601
Target Start/End: Original strand, 23040511 - 23040670
Alignment:
Q  442 caaatgtaacattccatagtgcacgcgactttgatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttgg 541  Q
    |||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |  ||||||||||| ||||| ||||| |||||||||||    
T  23040511 caaatgaaacattcaatagtgcacgtgactttgatggtcatggttcacatactttatcaactgttggaggaaatttcgttgctaatgcgagtgtatttgg 23040610  T
Q  542 caatggcctaggaacagcaagtggtggatcacctaacgcacgagttgcggcctataaggt 601  Q
    |||||||| |||||||||||||||||||||||| || || |||||||| |||||||||||    
T  23040611 caatggccgaggaacagcaagtggtggatcaccaaaagctcgagttgcagcctataaggt 23040670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 380 - 425
Target Start/End: Original strand, 23040443 - 23040488
Alignment:
Q  380 taggaagctaattggagcaagatatttttacaaaggctatttggca 425  Q
    ||||||||| |||||||||||||||||| ||||||||||| |||||    
T  23040443 taggaagcttattggagcaagatattttaacaaaggctatctggca 23040488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 37110561 - 37110521
Alignment:
Q  113 ataggtgtttggcctgaatcaaagagctttagcgatgaagg 153  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  37110561 ataggcgtttggcctgaatcaaagagctttagtgatgaagg 37110521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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