View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19511_low_4 (Length: 548)
Name: NF19511_low_4
Description: NF19511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19511_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 538
Target Start/End: Complemental strand, 20014887 - 20014376
Alignment:
| Q |
18 |
gatttgtcaaccaagaaccaagggtggtctt-gatgtcaaagacgttaaattagttaatttaagttttcttactaaatggagatggcggttgatccaaat |
116 |
Q |
| |
|
||||||||||||| | |||||| |||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20014887 |
gatttgtcaaccagggaccaagagtggtcttagatgtcaaagacgttaaattgattaatttaagttttcttattaaatggagatggcggttgatccaaat |
20014788 |
T |
|
| Q |
117 |
ggacaattctctttgaaaacgggttcttgaagacaagtatggcattcatattgtgtgatatgccatttttagaaagatttgcaaaggtttttgaagacaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20014787 |
ggacaattctctttgaaaacgggttcttgaagacaagtatgacattcatattgtgtgatatggcatttttagaaagatttgcaaaggtttttgaagacaa |
20014688 |
T |
|
| Q |
217 |
gtatgacatccatattgtgttattgttttcaatttggcgaatttggagggagcgaaacgattgaattttcaaagtgttatcttgacaatagagtttaagc |
316 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20014687 |
gtatggcatccatattgtgttattgttttcaatttggcgaatttggagggag-----cgattgaattttcaaagtgttatcttgacaatagagtttaagc |
20014593 |
T |
|
| Q |
317 |
aaaggaaagattgcatcatgtttattctatgagctggcaccaagggattcttattttannnnnnnngaaggaaggaggaaagggattcttattatttgct |
416 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
20014592 |
aaaggaaatattgcatcatgtttattctatgagctggcaccaagggattcttttttt---ttttttgaaggaaggaggaaagggattcttattatttgct |
20014496 |
T |
|
| Q |
417 |
accaaaaaccttatagatttatagattttatgggttggcataggttctaaactgggtgctcaattgtgcgtaggggtgttaatgnnnnnnnnnggtactt |
516 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
20014495 |
accaaaaaccttaaagatttatagattttatgggttggcataggtactaaactgggtgctcaattgtgcgta-gggtgttaatgttttttttt-gtactt |
20014398 |
T |
|
| Q |
517 |
gtgtgctactgctgttcctttg |
538 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
20014397 |
gtgtgctactgctgttcctttg |
20014376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University