View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19511_low_7 (Length: 438)
Name: NF19511_low_7
Description: NF19511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19511_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 30098835 - 30099254
Alignment:
| Q |
1 |
ttcaaatccaaatgttacaatcagcatgaactcagctagagacactataggacatggaactcacacatcatcaactgttgcaggtaactannnnnnnngt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
30098835 |
ttcaaatccaaatgttacaatcagcatgaactcagctagagacactatagggcatggaactcacacatcatcaactgttgcaggtaactattttttttgt |
30098934 |
T |
|
| Q |
101 |
ggttggagacaaatgttagtaaattatgttagtttccggtgtttgaactctcgacttcctagctagtactcattcggtgtctctgagcttaccaatcgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30098935 |
tgttggagacaaatgttagtaaattatgttagtttccggtgtttgaactctcgacttcctagctagtactcattcggtgtctctgagcttaccaatcgaa |
30099034 |
T |
|
| Q |
201 |
ctgtctgctttgaacttgtaggtaactatgttaatggagcttcttattttggttatgctaaaggaatagcaagaggcattgcaccaaaagctaggattgc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30099035 |
ctgtctgctttgaacttgtaggtaactatgttaatggagcttcttattttggttatgccaaaggaatagcaagaggcattgcaccaaaagctaggattgc |
30099134 |
T |
|
| Q |
301 |
tatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttttagctggcatggaccaagctattaacgacggtgttgatgtgatttcaatttca |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30099135 |
tatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttttagctggcatggaccaagctattaacgacggtgttgatgtgatttcaatttca |
30099234 |
T |
|
| Q |
401 |
atgggatttgatgatgttcc |
420 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
30099235 |
atgggatttgatgatgttcc |
30099254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 164 - 420
Target Start/End: Complemental strand, 30091914 - 30091659
Alignment:
| Q |
164 |
tagtactcattcggtgtctctgagcttaccaatcgaactgtctgctttgaacttgtaggtaactatgttaatggagcttcttattttggttatgctaaag |
263 |
Q |
| |
|
|||||||| ||| || |||| ||||||| |||||| |||||||||| | |||| |||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
30091914 |
tagtactccttctgtaactctcagcttactaatcgagctgtctgcttcggacttc-aggtaactatgtcaatggaacttcttattttggttatgctaaag |
30091816 |
T |
|
| Q |
264 |
gaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttttagctggcatggacca |
363 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||| |||||||| |
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| T |
30091815 |
gagtagcaagaggcattgcaccaagagctaggcttgctatgtacaaagtcatttgggaagagggtcttttggcttctgatgttttagctggaatggacca |
30091716 |
T |
|
| Q |
364 |
agctattaacgacggtgttgatgtgatttcaatttcaatgggatttgatgatgttcc |
420 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| ||||||||||||| |||||| |
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|
| T |
30091715 |
agctattgctgatggtgttgatgtgatttcaatttctatgggatttgatggtgttcc |
30091659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 220 - 413
Target Start/End: Complemental strand, 30087879 - 30087686
Alignment:
| Q |
220 |
aggtaactatgttaatggagcttcttattttggttatgctaaaggaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgg |
319 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
30087879 |
aggtaactatgtcaacggagcttcttattttggctatgctaaaggagtagcaagaggcattgcaccaaaagctaagattgctatgtacaaagtcatttgg |
30087780 |
T |
|
| Q |
320 |
gaagagggtcgtttcgcctctgatgttttagctggcatggaccaagctattaacgacggtgttgatgtgatttcaatttcaatgggatttgatg |
413 |
Q |
| |
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||||||| | | | || ||||||||||||||||| ||||||||||| |||| || |||||||| |||||||||||||| || ||| |||||| |
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| T |
30087779 |
gaagaggatgttatggcttctgatgttttagctggaatggaccaagcaattattgatggtgttgacgtgatttcaatttctattggaattgatg |
30087686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 30092031 - 30091942
Alignment:
| Q |
1 |
ttcaaatccaaatgttacaatcagcatgaactcagctagagacactataggacatggaactcacacatcatcaactgttgcaggtaacta |
90 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
30092031 |
ttcaaatccaaatgttagaatcaggatgaactcagctagagacagtatcggacatggaactcatacatcatcaacagttgcaggtaacta |
30091942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 30088061 - 30087982
Alignment:
| Q |
10 |
aaatgttacaatcagcatgaactcagctagagacactataggacatggaactcacacatcatcaactgttgcaggtaact |
89 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
30088061 |
aaatgttggaatcagcaagaactcagctagagacagtatcggacatggaactcatacatcatcaactgttgcaggtaact |
30087982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 370
Target Start/End: Complemental strand, 35171551 - 35171429
Alignment:
| Q |
248 |
tttggttatgctaaaggaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttt |
347 |
Q |
| |
|
||||||||||| ||||| |||| ||||| ||||||||||||||||| ||||| ||||| ||||| ||||||| || |||||| | || ||||||||| |
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|
| T |
35171551 |
tttggttatgcaaaaggtgtagctagaggtattgcaccaaaagctagaattgcaatgtataaagtactttgggacgaaggtcgtctagcttctgatgttc |
35171452 |
T |
|
| Q |
348 |
tagctggcatggaccaagctatt |
370 |
Q |
| |
|
| || || ||||| ||||||||| |
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|
| T |
35171451 |
ttgcaggaatggatcaagctatt |
35171429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 35171659 - 35171586
Alignment:
| Q |
2 |
tcaaatccaaatgttacaatcagcatgaactcagctagagacactataggacatggaactcacacatcatcaac |
75 |
Q |
| |
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||||| |||||||| | |||||| |||||||||||||||||||| ||||||||| | ||||||||||||||| |
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|
| T |
35171659 |
tcaaaaccaaatgtcaaaatcagtatgaactcagctagagacacacaaggacatggtagtcacacatcatcaac |
35171586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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