View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19512_high_1 (Length: 681)
Name: NF19512_high_1
Description: NF19512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19512_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 15 - 568
Target Start/End: Complemental strand, 2238869 - 2238311
Alignment:
| Q |
15 |
aatatacaatggtacaatttattttccaagttggaatggtaacatatatgcaattaaacaaattgatgggtcacttgtttggaagcaaaacttggagaaa |
114 |
Q |
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| T |
2238869 |
aatatacaatggtacaatttattttccaagctggaatggtaacatatatgcaattaaacaagttgatggatcacttgtttggaagcaaaacttggagaaa |
2238770 |
T |
|
| Q |
115 |
ttgacaggtttgaatacaactggatttataattaatgcaaattggacagtggctagagcaactccaacagtggctgaagatttattgattgttggaattt |
214 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
2238769 |
ttgacaggtttaaatacaactggatttataattaatgcaaattggacattggctagagcaactccaactgtggctgaagatttgttgattgttggaattt |
2238670 |
T |
|
| Q |
215 |
atggacctgctgttgttattggtcttgaaaggagaactggtgagcttgtttggttgactcatttggataatcatcctgcagcagttgttaccatgtctgg |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
2238669 |
atggacctgctgttgttattggtcttgaaaggagaactggtgagcttgtttggttgactcatttggataatcaccctgcaggagttgttaccatgtctgg |
2238570 |
T |
|
| Q |
315 |
aacttattataatgggttagtataattacattctttttctcatgcttcttgatcttctttccaatgttttaagaatcggatcatatcaccaggttcaact |
414 |
Q |
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||||||||| |||||||||||| ||||||||||| || |||| || |||| ||||||||||||||||||||| |||| ||| |||||| ||||||| | |
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| T |
2238569 |
aacttattacaatgggttagta-aattacattctcttgctcaagcctcttaatcttctttccaatgttttaaaaatcagattatatcagttggttcaatt |
2238471 |
T |
|
| Q |
415 |
ggttgaactaagaaac----ggttcatcggttggtttgattttgattatatcgtaatctaattgaaccgcagttgaattggttgagtcacggttggttca |
510 |
Q |
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| ||||| |||||| | |||| |||||||||||| | ||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||| |
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| T |
2238470 |
gattgaaataagaatcagctagttcgtcggttggtttgttcttgattatatcgtaatctaattgaaccacaattgaattggttgaatcacagttggttca |
2238371 |
T |
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| Q |
511 |
gctagtttttagttttatttaa--tttgttactttttcacctataattttgtcctctagt |
568 |
Q |
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|||||||||| |||||||||| |||||||||| || || |||| |||| ||||||||| |
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| T |
2238370 |
actagtttttatttttatttaatttttgttacttattaacttatatttttctcctctagt |
2238311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 15 - 348
Target Start/End: Complemental strand, 2229908 - 2229575
Alignment:
| Q |
15 |
aatatacaatggtacaatttattttccaagttggaatggtaacatatatgcaattaaacaaattgatgggtcacttgtttggaagcaaaacttggagaaa |
114 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| || |
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| T |
2229908 |
aatatacaatggtacaatttattttccatgctggaatggtaacatatatgcaattaaacaaattgatggatcacttgtttggaagcaaaatttggaggaa |
2229809 |
T |
|
| Q |
115 |
ttgacaggtttgaatacaactggatttataattaatgcaaattggacagtggctagagcaactccaacagtggctgaagatttattgattgttggaattt |
214 |
Q |
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||||||||||| ||| |||||||| |||| | || ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2229808 |
ttgacaggtttaaatgcaactggaattatcaaagctgtaaattggtcagtggctagagcaactccaactgtggctgaagatttattgattgttggaattt |
2229709 |
T |
|
| Q |
215 |
atggacctgctgttgttattggtcttgaaaggagaactggtgagcttgtttggttgactcatttggataatcatcctgcagcagttgttaccatgtctgg |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||| ||||||||||||| |
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| T |
2229708 |
atggacctgctgttgttattggtcttgaaaggagaactggtgagcttatttggttgacccatttggataatcatcctgcaggagttattaccatgtctgg |
2229609 |
T |
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| Q |
315 |
aacttattataatgggttagtataattacattct |
348 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
2229608 |
aacttattataatgggttagtataattccattct |
2229575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 436 - 495
Target Start/End: Complemental strand, 2229506 - 2229447
Alignment:
| Q |
436 |
atcggttggtttgattttgattatatcgtaatctaattgaaccgcagttgaattggttga |
495 |
Q |
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|||| |||||||||| |||||| ||||||||| |||||||||| ||||||||||||||| |
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| T |
2229506 |
atcgattggtttgatcttgattgtatcgtaatttaattgaaccctagttgaattggttga |
2229447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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