View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19512_high_4 (Length: 381)
Name: NF19512_high_4
Description: NF19512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19512_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 5 - 364
Target Start/End: Original strand, 41557375 - 41557734
Alignment:
| Q |
5 |
gaggagcacagagatagatcttccaaattcattggagagagtgaaagaaactggtcttaggcttgcaagttattgcaaacgtttcaatgttccttttgag |
104 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41557375 |
gaggatcacagggatagatcttccaaattcattggagagagtgaaagaaactggtcttaggcttgcaagttattgcaaacgtttcaatgttccttttgag |
41557474 |
T |
|
| Q |
105 |
tacaatggtattgcaaaaaattgggaaagtatcaaagttgaagattttaagataaggaaaaatgagtttgttgctgtgaattgtttgtttaagtttgaga |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41557475 |
tacaatggtattgcaaaaaattgggaaagtatcaaagttgaagattttaacataaggaaaaacgagtttgttgctgtgaattgtttgtttaagtttgaga |
41557574 |
T |
|
| Q |
205 |
atctaccggatgagacagtagtttcggagaatccgaagggtgctgttttggatttgattagaaagacaaatccgaatatatttattcatagcattgttaa |
304 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41557575 |
atctactggatgagacagtagtttcggagaatccgaagggtgctgttttggatttgattagaaagacaaatccgaatatatttattcatagcattgttaa |
41557674 |
T |
|
| Q |
305 |
tggtggttatgatgcaccnnnnnnngtgacaaggtttaaggaagctgtttttcattattc |
364 |
Q |
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| T |
41557675 |
tggtggttacgatgaacctttttttgtgacaaggtttaaggaagctgtttttcattattc |
41557734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 5 - 364
Target Start/End: Original strand, 41583504 - 41583863
Alignment:
| Q |
5 |
gaggagcacagagatagatcttccaaattcattggagagagtgaaagaaactggtcttaggcttgcaagttattgcaaacgtttcaatgttccttttgag |
104 |
Q |
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| T |
41583504 |
gaggatcacagggatagatcttccaaattcattggagagagtgaaagaaactggtcttaggcttgcaagttattgcaaacgtttcaatgttccttttgag |
41583603 |
T |
|
| Q |
105 |
tacaatggtattgcaaaaaattgggaaagtatcaaagttgaagattttaagataaggaaaaatgagtttgttgctgtgaattgtttgtttaagtttgaga |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41583604 |
tacaatggtattgcaaaaaattgggaaagtatcaaagttgaagattttaagataaggaaaaacgagtttgttgctgtgaattgtttgtttaagtttgaga |
41583703 |
T |
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| Q |
205 |
atctaccggatgagacagtagtttcggagaatccgaagggtgctgttttggatttgattagaaagacaaatccgaatatatttattcatagcattgttaa |
304 |
Q |
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| T |
41583704 |
atctactggatgagacagtagtttcggagaatccgaagggtgatgttttggatttgattagaaagacaaatccgaatatatttattcatagcattgttaa |
41583803 |
T |
|
| Q |
305 |
tggtggttatgatgcaccnnnnnnngtgacaaggtttaaggaagctgtttttcattattc |
364 |
Q |
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||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
41583804 |
tggtggttacgatgaacctttttttgtgacaaggtttaaggaagctgtttttcattattc |
41583863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 5 - 364
Target Start/End: Original strand, 41590035 - 41590394
Alignment:
| Q |
5 |
gaggagcacagagatagatcttccaaattcattggagagagtgaaagaaactggtcttaggcttgcaagttattgcaaacgtttcaatgttccttttgag |
104 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41590035 |
gaggatcacagggatagatcttccaaattcattggagagagtgaatgaaacaggtcttaggctttcaagttattgcaaacgtttcaatgttccttttgag |
41590134 |
T |
|
| Q |
105 |
tacaatggtattgcaaaaaattgggaaagtatcaaagttgaagattttaagataaggaaaaatgagtttgttgctgtgaattgtttgtttaagtttgaga |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||| |
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| T |
41590135 |
tacaatggtattgcaaaaaattgggaaagtatcaaagttcaggattttaagataaggaaaaatgagtttgttgcagtgacttgtgtgtttaagtttgaga |
41590234 |
T |
|
| Q |
205 |
atctaccggatgagacagtagtttcggagaatccgaagggtgctgttttggatttgattagaaagacaaatccgaatatatttattcatagcattgttaa |
304 |
Q |
| |
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||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
41590235 |
atctacctgatgagacagttgtttcggagaatccgaggggtgctgttttggatttgattaagaaggcaaatccgaatatatttattcatagcattgttaa |
41590334 |
T |
|
| Q |
305 |
tggtggttatgatgcaccnnnnnnngtgacaaggtttaaggaagctgtttttcattattc |
364 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
41590335 |
tggtggttatgatgcacctttttttgtgacaaggtttaaggaagctgttttttattattc |
41590394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 361
Target Start/End: Original strand, 41571093 - 41571443
Alignment:
| Q |
11 |
cacagagatagatcttccaaattcattggagagagtgaaagaaactggtcttaggcttgcaagttattgcaaacgtttcaatgttccttttgagtacaat |
110 |
Q |
| |
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||||| ||||||||||||||||| |||||||||||||| | ||| ||||||||||||||| ||||||| |||||||| |||||||||||||| |||| |
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| T |
41571093 |
cacagggatagatcttccaaatttgttggagagagtgaatggaacaggtcttaggcttgcagcttattgcgaacgtttcggtgttccttttgagttcaat |
41571192 |
T |
|
| Q |
111 |
ggtattgcaaaaaattgggaaagtatcaaagttgaagattttaagataaggaaaaatgagtttgttgctgtgaattgtttgtttaagtttgagaatctac |
210 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
41571193 |
ggtattgcgaaaaattgggaaagtatcaaagttgaggattttaagataaggaaaaatgagtttgttgctgtgaattgttattttaaatttgagaatctac |
41571292 |
T |
|
| Q |
211 |
cggatgagacagtagtttcggagaatccgaagggtgctgttttggatttgattagaaagacaaatccgaatatatttattcatagcattgttaatggtgg |
310 |
Q |
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|||||||| || | | |||||||||| | ||||||||||||||||||||||| ||| ||||||||||||||||| |||| ||||||||||||||| | |
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| T |
41571293 |
ttgatgagacggttgctccggagaatccaaggggtgctgttttggatttgattaagaaggcaaatccgaatatatttgttcaaagcattgttaatggttg |
41571392 |
T |
|
| Q |
311 |
ttatgatgcaccnnnnnnngtgacaaggtttaaggaagctgtttttcatta |
361 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
41571393 |
ttatgatgcacctttttttgtgacaaggtttaaagaagctgtttttcatta |
41571443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 169
Target Start/End: Complemental strand, 23916537 - 23916437
Alignment:
| Q |
69 |
gcaagttattgcaaacgtttcaatgttccttttgagtacaatggtattgcaaaaaattgggaaagtatcaaagttgaagattttaagataaggaaaaatg |
168 |
Q |
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||||| ||||| ||||||| |||||||| ||||||| ||||| ||||||| | || ||||||| ||||||||||| || || ||||||| |||||||| |
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| T |
23916537 |
gcaaggtattgtgaacgttttaatgttccgtttgagttcaatgctattgcacagaaatgggaaaccatcaaagttgaggacttgaagataaagaaaaatg |
23916438 |
T |
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| Q |
169 |
a |
169 |
Q |
| |
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| |
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| T |
23916437 |
a |
23916437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 23904977 - 23905013
Alignment:
| Q |
75 |
tattgcaaacgtttcaatgttccttttgagtacaatg |
111 |
Q |
| |
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|||||||| ||||||||||||||||| |||||||||| |
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| T |
23904977 |
tattgcaagcgtttcaatgttcctttcgagtacaatg |
23905013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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