View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19512_low_2 (Length: 504)
Name: NF19512_low_2
Description: NF19512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19512_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 35903039 - 35902556
Alignment:
| Q |
1 |
tcggcgaaatatatacaggacgcaagtggttttaacttttaatggtgtcttatttgagttgctaatgtcatttagccaagaaaagcatcaagactttggg |
100 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35903039 |
tcggcaaaatatatgcaggacgcaagtggttttaacttttaatggtgtcttatttgagttgctaatgtcatttagccaagaaaagcatcaagactttggg |
35902940 |
T |
|
| Q |
101 |
atgcagttctggtgtatttggcgaagaccgaatgataaagtatgaagaattgcaagaaaccaattcgtgtatcagccggcctggtacacggacatttgct |
200 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
35902939 |
atgcaattctggtgtatttggcgaagac-gaatgataaagtatgaagaattgcaagaaaccaattcgcatatcagccggcctggtacgcggacatttgct |
35902841 |
T |
|
| Q |
201 |
gcagtgacttgctgcacactgacaatgccaatttcgcaacaaaatgagtcgccagtagcagcaaaacgtgacagtagcatcagcagtgcgagacagaaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
35902840 |
gcagtgacttgctgcacactgacaatgccaatttcgcaacaaaatgagtcgccaatagcagcaaaacgtgacagtagcatcagcagtgcgagacagcagc |
35902741 |
T |
|
| Q |
301 |
cgtagaccaagaaagaggcagcagcaggccgtgacagaagcatcataattccgcaatagcagctgtagcagacccggaagtcagcagtaggccgtgacag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35902740 |
cgtagaccaagaaagaggcagcagcaggccgtgacagaagcatcataattccgcaatagcagctgtagcagacccggaagtcagcagtaggccgtgacag |
35902641 |
T |
|
| Q |
401 |
aagcagcagcagtccgcgacagcaacagtatgtaatggtcaagcaaataacagagatgaaattgcaagcttcaatgtaacagtgc |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35902640 |
aagcagcagcagtccgcgacagcaacagtatgtaatggtcaagcaaataacagagatgaaattgcaagcttcaatgtaacagtgc |
35902556 |
T |
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