View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19512_low_3 (Length: 416)
Name: NF19512_low_3
Description: NF19512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19512_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 14 - 402
Target Start/End: Complemental strand, 42026170 - 42025784
Alignment:
| Q |
14 |
gagcagaacctgtggccatcctaaacattcctcttcctccgaccaccgcgagttccctcgtcggttccctcaccggattcctcgaaagaacactaaagga |
113 |
Q |
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| T |
42026170 |
gagcaaaaccagtggccatcctaaactttcctcttcctccgaccaccgcgagttccctcgtcggttccctcaccggattcctcgaaagaacactaaagga |
42026071 |
T |
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| Q |
114 |
gcttccatttaattcaccagaggtgaaagcataatcaacatacatagtaagtgtcacatcttcactttggctagagatgccacataaagatcttgtgcat |
213 |
Q |
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| T |
42026070 |
gcttccatttaattcaccagaggtgaaagcataatcaacatacatagtaagtgtcacatcttcactctggctaga--tgccacataaagaccttgtgcat |
42025973 |
T |
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| Q |
214 |
ttccaaccacacttgatgtttcttcaggaccttccctaagaggattgtcaatggcataaacagtaccaaacaatgaatgtttcttaggaatgtcacttat |
313 |
Q |
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| T |
42025972 |
ttccaactacatttgatgtttcttcaggaccttccctaagaggattgtcaatggcataaacagtaccaaacaatgaatgtttcttaggaatgtcacttgt |
42025873 |
T |
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| Q |
314 |
ttggttagcacgtgccacaacaactgcacttgggttattgcctgtgtgaatatcaaagtagtagaaacgaaggtgagttaccttatttg |
402 |
Q |
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| T |
42025872 |
ttggttagcacgtgccacaacaactgcacttgggttattgcctgtgtgaatatcaaagtagtagaaatgaaggtgagttaccttatttg |
42025784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 350 - 402
Target Start/End: Complemental strand, 1253045 - 1252993
Alignment:
| Q |
350 |
attgcctgtgtgaatatcaaagtagtagaaacgaaggtgagttaccttatttg |
402 |
Q |
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| T |
1253045 |
attgcctgtgtgaatatcaaagtagtagaaatgaaggtgagttcccttatttg |
1252993 |
T |
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