View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19512_low_5 (Length: 376)
Name: NF19512_low_5
Description: NF19512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19512_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 62 - 361
Target Start/End: Complemental strand, 4078276 - 4077977
Alignment:
| Q |
62 |
cacaccatccttcacattccctcagtttgggaggaattccaagaacttgagatacaaatgatgcaaagtccatatcctccctagttttttgcagtcgaac |
161 |
Q |
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| T |
4078276 |
cacaccatccttcacattccctcagtttgggaggaattccaagaacttgagatacaaatgatgcaaagtccatatcctccctagttttttggagtcgaac |
4078177 |
T |
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| Q |
162 |
aaggcataaatttcatctattatccaatcaatctcacccttgttatgttccaccctcacttgtgtgaatatattctatgtgtcaaccattcctaaatctt |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4078176 |
aaggcataaatttcatctattatccaatcaatctcacccttgttatgtgccaccctcacttgtgtgaatatattctatgtgtcaaccattcctaaatctt |
4078077 |
T |
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| Q |
262 |
cttctccactaatcatcactgctactagatcaacaatattagcctccatagtacatcggtatttttgaggaatttccattatatgaggcataaccattcc |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4078076 |
cttctccactaatcatcactgctactagatcaacaatattagcctccatagtacatcggtatttttgaggaatttccattatatgaggcataaccattcc |
4077977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 62 - 247
Target Start/End: Complemental strand, 4101031 - 4100846
Alignment:
| Q |
62 |
cacaccatccttcacattccctcagtttgggaggaattccaagaacttgagatacaaatgatgcaaagtccatatcctccctagttttttgcagtcgaac |
161 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4101031 |
cacaccatccttcacattccctcagtttaggaggaattccaagaacttgagatacaaatgatgcaaagtccatatcctccctagttttttgcagttgaac |
4100932 |
T |
|
| Q |
162 |
aaggcataaatttcatctattatccaatcaatctcacccttgttatgttccaccctcacttgtgtgaatatattctatgtgtcaac |
247 |
Q |
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| T |
4100931 |
aaggcataaatttcatctattatccaatcaatctcacccttgttatgtgccaccctcacttgtgtgaatatattctacgtgtcaac |
4100846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 4078419 - 4078375
Alignment:
| Q |
17 |
caaatttaacagagaaaacttagtttttcaacttcaatttcattg |
61 |
Q |
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| T |
4078419 |
caaatttaacagagaaaacatagtttttcaacttcaatttcattg |
4078375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 4101172 - 4101128
Alignment:
| Q |
17 |
caaatttaacagagaaaacttagtttttcaacttcaatttcattg |
61 |
Q |
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| T |
4101172 |
caaatttaacagagaaaacatagtttttcaacttcaatttcattg |
4101128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 4502620 - 4502677
Alignment:
| Q |
87 |
tttgggaggaattccaagaacttgagatacaaatgatgcaaagtccatatcctcccta |
144 |
Q |
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|||||||||||||||| |||||| || ||||| |||||| ||||||||||||||||| |
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| T |
4502620 |
tttgggaggaattccatgaactttaggtacaactgatgcggagtccatatcctcccta |
4502677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 19568774 - 19568715
Alignment:
| Q |
78 |
ttccctcagtttgggaggaattccaagaacttgagatacaaatgatgcaaagtccatatc |
137 |
Q |
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|||| ||| |||| ||||||||||| |||||||||||||| ||||| || |||||||||| |
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| T |
19568774 |
ttccttcactttgagaggaattccatgaacttgagatacagatgatacatagtccatatc |
19568715 |
T |
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