View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19512_low_7 (Length: 256)

Name: NF19512_low_7
Description: NF19512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19512_low_7
NF19512_low_7
[»] chr3 (2 HSPs)
chr3 (18-256)||(31063746-31063984)
chr3 (18-233)||(31075149-31075364)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 31063984 - 31063746
Alignment:
Q  18 gacaagagttgaagaaacaaagcttgttcttaacataatccccatatggctagcttcattaacaactggaataactttagcacaagctacaacactcttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31063984 gacaagagttgaagaaacaaagcttgttcttaacataatccccatatggctagcttcattaacaactggaataactttagcacaagctacaacactcttt 31063885  T
Q  118 gtaaaacaagcagcttcgatgaacttgaagctaagcgacaatttcactatcccaccaggttctgttgtctctgttacagcaattggcaccttgatatttg 217  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31063884 gtaaaacaagcagcttcaatgaacttgaagctaagcgacaatttcacaatcccaccaggttctgttgtctctgttacagcaattggcaccttgatatttg 31063785  T
Q  218 ttcccttatatgacaaagttcttgtaccaattatgagaa 256  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31063784 ttcccttatatgacaaagttcttgtaccaattatgagaa 31063746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 31075364 - 31075149
Alignment:
Q  18 gacaagagttgaagaaacaaagcttgttcttaacataatccccatatggctagcttcattaacaactggaataactttagcacaagctacaacactcttt 117  Q
    ||||||||| ||||||||||||||| |||| ||  |||| || ||||||||| ||||||||||||| ||||||  | |||||||||   | |||||||||    
T  31075364 gacaagagtagaagaaacaaagcttattctgaatgtaattccaatatggctaacttcattaacaacaggaatatgtgtagcacaaggctccacactcttt 31075265  T
Q  118 gtaaaacaagcagcttcgatgaacttgaagctaagcgacaatttcactatcccaccaggttctgttgtctctgttacagcaattggcaccttgatatttg 217  Q
    ||||||||||| ||||| |||||||||||| |||| |||| |||||| |||||||||| |||||||  | |||   |||||||||||||||| |||| ||    
T  31075264 gtaaaacaagctgcttcaatgaacttgaagataagtgacagtttcacaatcccaccagcttctgtttccactgcagcagcaattggcaccttaatatctg 31075165  T
Q  218 ttcccttatatgacaa 233  Q
    ||||  ||||||||||    
T  31075164 ttccaatatatgacaa 31075149  T

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