View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19512_low_9 (Length: 241)
Name: NF19512_low_9
Description: NF19512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19512_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 31063728 - 31063503
Alignment:
| Q |
1 |
agaggcatcagcatccttagaagaattgccattggcttagcattttcagtcatggttatgattgttgcagccttagtagaagctaagagacttagaatgc |
100 |
Q |
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| T |
31063728 |
agaggcatcagcatccttagaagaattgccattggcttagcattttcagtcatggttatgattgttgcagccttagtagaagctaagagacttagaatgc |
31063629 |
T |
|
| Q |
101 |
atgagcgagaaattctcagatcaggggaaacaggaaaaaatactatgagtgtcttttggttagtccctcaatatttgatccttggtttcggtgattcatt |
200 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31063628 |
atgagcaagaaattctcagatcaggagaaacaggaaaaaatactatgagtgtcttttggttagtccctcaatatttgatccttggtttcggtgattcatt |
31063529 |
T |
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| Q |
201 |
ttcccttgttggtttacaagagtatt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
31063528 |
ttcccttgttggtttacaagagtatt |
31063503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 31075108 - 31074997
Alignment:
| Q |
1 |
agaggcatcagcatccttagaagaattgccattggcttagcattttcagtcatggttatgattgttgcagccttagtagaagctaagagacttagaatgc |
100 |
Q |
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||||| |||||||| |||||||||||| |||||||||| ||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31075108 |
agaggaatcagcatacttagaagaatttccattggcttcacatcttcagtcatagttatgattgttgcagcattagtagaagctaagagacttagaatgc |
31075009 |
T |
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| Q |
101 |
atgagcgagaaa |
112 |
Q |
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|||||| ||||| |
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| T |
31075008 |
atgagcaagaaa |
31074997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 31074997 - 31074913
Alignment:
| Q |
142 |
actatgagtgtcttttggttagtccctcaatatttgatccttggtttcggtgattcattttcccttgttggtttacaagagtatt |
226 |
Q |
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||||||||||| ||||||||||| |||||||||||||| ||||| | |||||||||||||| |||||||||||||||||||||| |
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| T |
31074997 |
actatgagtgtgttttggttagtgcctcaatatttgattcttggcattggtgattcattttctcttgttggtttacaagagtatt |
31074913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 31057579 - 31057513
Alignment:
| Q |
68 |
cagccttagtagaagctaagagacttagaatgcatgagcgagaaattctcagatcaggggaaacagg |
134 |
Q |
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||||||||||||||| ||||||||||||||||| |||| ||||| | ||| ||||||||||||| |
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| T |
31057579 |
cagccttagtagaagttaagagacttagaatgcttgagaatgaaatcttgagaacaggggaaacagg |
31057513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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