View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19513_high_13 (Length: 273)
Name: NF19513_high_13
Description: NF19513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19513_high_13 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 27745194 - 27745444
Alignment:
| Q |
19 |
acattggcctgaatggcatatagataaagctcttcgatttgatttcagcttgaatattcaagcataactttataataataataattttatcagtttcata |
118 |
Q |
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| T |
27745194 |
acattggcctgaatggcatatagataaagctcttcaatttgatttcagcttgaat---caagcataactttataataataataattttatcagtttcata |
27745290 |
T |
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| Q |
119 |
gtgcttcttaccaacatttagaattgaagattgttgaacatccttttaagcattcattgtatcattctgtaagtattgcatggtgttccaagcttacttt |
218 |
Q |
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| T |
27745291 |
gtgcttcttaccaacatttagaattgaagattgttgaacttccttttaagcattcattgtatcattctgtaagtattgcatggtgttccaagcttacttt |
27745390 |
T |
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| Q |
219 |
aacactgaagagtaatgtgtaaacatggtgactaagaaaatatcgttcttttttc |
273 |
Q |
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| T |
27745391 |
aacactgaagagtaatgtgtaaacatggagactta-aaaatatcgttcttttttc |
27745444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 273
Target Start/End: Original strand, 49513670 - 49513813
Alignment:
| Q |
130 |
caacatttagaattgaagattgttgaacatccttttaagcattcattgtatcattctgtaagtattgcatggtgttccaagcttactttaacactgaaga |
229 |
Q |
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| T |
49513670 |
caacatttggaatttaatattgttaaacttccctttaagaattcattatatcaagctgtaagtattgcatgatgttccaaacatactttaacactcaaaa |
49513769 |
T |
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| Q |
230 |
gtaatgtgtaaacatggtgactaagaaaatatcgttcttttttc |
273 |
Q |
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| T |
49513770 |
gtaatgtgtaaacatggtgaataagacaacatcattcttttttc |
49513813 |
T |
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