View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19513_high_15 (Length: 230)
Name: NF19513_high_15
Description: NF19513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19513_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 27745477 - 27745671
Alignment:
| Q |
1 |
atcattgtggtctattatatgttttagtgtcacacatgctttgtttgatagacattacactccttaaaacacatggtaagcaatcaagacacgtataatt |
100 |
Q |
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| T |
27745477 |
atcattgtggtctattatatgttttagtgtcacacatgctttgtttgatagacattacactccttaaaacacatggtaagcaatcaagacatgtataatt |
27745576 |
T |
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| Q |
101 |
catattattgtatttttgtctgcagcatggattttttaactgtaatgatgatagatatacttgcatccccaatgtatatcttagaatatttaatc |
195 |
Q |
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| T |
27745577 |
catattattgtatttttgtctgcagcatggattttttaactgtaatgatggtagatatacttgcatccccaatgtatatcttagaatatttaatc |
27745671 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 49514024 - 49514088
Alignment:
| Q |
123 |
cagcatggattttttaactgtaatgatgatagatatacttgcatccccaatgtatatcttagaat |
187 |
Q |
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| T |
49514024 |
cagcatagattttttatccgtaacgatgataagtatactcgtatccgcaatgtatatcttagaat |
49514088 |
T |
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