View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19513_high_8 (Length: 345)
Name: NF19513_high_8
Description: NF19513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19513_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 33297048 - 33296764
Alignment:
| Q |
19 |
attctgtctatactttccagccataaacacaagaaaacaacaaagagtagcactgactcaagatatcaacttagattcatttctaaaccaaaattgcaca |
118 |
Q |
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| T |
33297048 |
attctgtctatactttccagccataaacacaagaaaacaacaaagagtagcactgactcaagatatcaacttagattcatttctaaaccaaaattgcaca |
33296949 |
T |
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| Q |
119 |
ttgcacacgtggtgtgacactattgagatgttttgcttatatacaagtggttgttcttagtgtgcttgaaagtatagtgatgtcaaagact-aggcagaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
33296948 |
ttgcacacgtggtgtgacactattgagatgttttgcttatatacaagtggttgttgttagtgtgcttgaaagtatagtgatgtgaaagactaaggcagaa |
33296849 |
T |
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| Q |
218 |
ttgttgaaattcaattgcaatagttagtctcgtatcgactatggtatatc--agagagagataactcttatattcgacatcttcc |
300 |
Q |
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|||||||||||||| |||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33296848 |
ttgttgaaattcaagtgcaatggttagtctcgcatcgactatggtatatcagagagagagataactcttatattcgacatcttcc |
33296764 |
T |
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