View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19513_high_9 (Length: 339)
Name: NF19513_high_9
Description: NF19513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19513_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 7690911 - 7691230
Alignment:
| Q |
1 |
aaagaaatgtagataagcacacactaaaatgcttgtctttctgccaaataagtaaagggttttgattatacctggttcaacttggaaatgcaacgatgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7690911 |
aaagaaatgtagataagcacacactaaaatgcttgtctttctgccaaataagtaaagggttttgattatacctggttcaacttggaaatgcaacgatgaa |
7691010 |
T |
|
| Q |
101 |
tcaaaaactttgtagcgatcctcactaatgagcacattgaacagtccaaccttaataggagtgaaggaaatcttccaatgatcaaaatctcctttgaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7691011 |
tcaaaaactttgtagcgatcctcactaatgagcacattgaacagtccaaccttaataggagtgaaggaaatcttccaatgatcaaaatctccttcgaaat |
7691110 |
T |
|
| Q |
201 |
tcgacaacactgttgatacataggaactattcccttcctttccattgacattaagtatgagatggaaattatttttgtcaattttatcaccattctcaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7691111 |
tcgacaacactgttgatacataggaactattcccttcctttccattgacattaagtatgagatggaaattatttttgtcaattttatcaccattctcaag |
7691210 |
T |
|
| Q |
301 |
tactttaaccttaatggttg |
320 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
7691211 |
tactttaaccttaatggttg |
7691230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 55 - 320
Target Start/End: Original strand, 13889705 - 13889970
Alignment:
| Q |
55 |
aagggttttgattatacctggttcaacttggaaatgcaacgatgaatcaaaaactttgtagcgatcctcactaatgagcacattgaacagtccaacctta |
154 |
Q |
| |
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||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| ||| ||| || |
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| T |
13889705 |
aagggttttgattttacctggttcaacttgaaaatgcaacgacgaatcaaaaactttgtaacgatcctcactaacgagcacattgaacaatccgacccta |
13889804 |
T |
|
| Q |
155 |
ataggagtgaaggaaatcttccaatgatcaaaatctcctttgaaattcgacaacactgttgatacataggaactattcccttcctttccattgacattaa |
254 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||| || ||||||||||||||||||| |
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| T |
13889805 |
ataggagtgaaggaaatcttccaattatcaaaatctcctttgaaattcgacaacacggtggatacataggaactatttccatcctttccattgacattaa |
13889904 |
T |
|
| Q |
255 |
gtatgagatggaaattatttttgtcaattttatcaccattctcaagtactttaaccttaatggttg |
320 |
Q |
| |
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||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
13889905 |
gtatgagatggaatttttttttgtcaatcttatcaccattctcaagtactttaaccttaattgttg |
13889970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 55 - 320
Target Start/End: Original strand, 14029830 - 14030095
Alignment:
| Q |
55 |
aagggttttgattatacctggttcaacttggaaatgcaacgatgaatcaaaaactttgtagcgatcctcactaatgagcacattgaacagtccaacctta |
154 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| ||| ||| || |
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| T |
14029830 |
aagggttttgattttacctggttcaacttgaaaatgcaacgacgaatcaaaaactttgtaacgatcctcactaacgagcacattgaacaatccgacccta |
14029929 |
T |
|
| Q |
155 |
ataggagtgaaggaaatcttccaatgatcaaaatctcctttgaaattcgacaacactgttgatacataggaactattcccttcctttccattgacattaa |
254 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||| || ||||||||||||||||||| |
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| T |
14029930 |
ataggagtgaaggaaatcttccaattatcaaaatctcctttgaaattcgacaacacggtggatacataggaactatttccatcctttccattgacattaa |
14030029 |
T |
|
| Q |
255 |
gtatgagatggaaattatttttgtcaattttatcaccattctcaagtactttaaccttaatggttg |
320 |
Q |
| |
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||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
14030030 |
gtatgagatggaatttttttttgtcaatcttatcaccattctcaagtactttaaccttaattgttg |
14030095 |
T |
|
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