View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19513_low_11 (Length: 333)
Name: NF19513_low_11
Description: NF19513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19513_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 318
Target Start/End: Original strand, 41118333 - 41118634
Alignment:
| Q |
17 |
gaatacaattataaaaaccagagaatttcatttacctccaatgacgtgtttttctgtgggagaatcttggttacaatttcaagatcaggtgattggactg |
116 |
Q |
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| T |
41118333 |
gaatacaattataaaaaccagagaatttcatttacctccaatgacgtgtttttctgtgggagaatcttggttacaatttcaagatcaggtgattggattg |
41118432 |
T |
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| Q |
117 |
ttaaatggcgtgcatccaaatgataatcttcctcctgtagataaacataagagaatatgtttaaaatgattatacacaacactgcaatcatccatgattg |
216 |
Q |
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| T |
41118433 |
ttaaatggcgtgcatccaaatgataatcttcctcctgtagataaacataagagaatatgtttaaaatgattatacacaacactgcaatcatccatgattg |
41118532 |
T |
|
| Q |
217 |
ctactcgtataagtgtttccgaagtgaacaacgcctaaggtttcagataggaagcataaaattaaattcataatattcaacatactgaaatcaggaaata |
316 |
Q |
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| T |
41118533 |
ctactcgtataagtgtttccgaagtgaacaacgcctaaggtttcagataggaagcataaaattaaattcataatattcaacatactgaaatcaggaaata |
41118632 |
T |
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| Q |
317 |
ta |
318 |
Q |
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|| |
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| T |
41118633 |
ta |
41118634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 41107871 - 41108083
Alignment:
| Q |
18 |
aatacaattataaaaaccagagaatttcatttacctccaatgacgtgtttttctgtgggagaatcttggttacaatttcaagatca-------------- |
103 |
Q |
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| T |
41107871 |
aatacaattataaaaaccagagaatttcatttacctccaatgatgtgtttttctgtgggagaatctcagttacaatatcaagatcatatttaccactagg |
41107970 |
T |
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| Q |
104 |
-ggtgattggactgttaaatggcgtgcatccaaatgataatcttcctcctgtagataaacataagagaatatgtttaaaatgattatacacaacactgca |
202 |
Q |
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| T |
41107971 |
aggtgattggattgttaaatggcgcgcatccaaatgataatcttcctcctgaagataaacataagagaatatctttaaaataattatacacaacactata |
41108070 |
T |
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| Q |
203 |
atcatccatgatt |
215 |
Q |
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|||||| |||||| |
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| T |
41108071 |
atcatcaatgatt |
41108083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 224 - 316
Target Start/End: Original strand, 41108133 - 41108226
Alignment:
| Q |
224 |
tataagtgtttccgaagtgaa-caacgcctaaggtttcagataggaagcataaaattaaattcataatattcaacatactgaaatcaggaaata |
316 |
Q |
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| T |
41108133 |
tataagtgtttctgaagtgaaacaacatctaaggtttcagctaggaatcataaaattacattcatagtattcagcatactgaaatcaggaaata |
41108226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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