View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19513_low_13 (Length: 301)
Name: NF19513_low_13
Description: NF19513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19513_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 49672978 - 49672719
Alignment:
| Q |
18 |
acatccatctcatttcaattcaacactatgtgttgttaatagaaaaaagtagataaaattaagtcatacagcaattaattcctcctaaaaggctaaaaac |
117 |
Q |
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| T |
49672978 |
acatccatctcatttcaattcaacactatgtgttgttaatagaaaaaagtagataaaataaagtcatacagcaattaattcctcctaaaaggctaaaaac |
49672879 |
T |
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| Q |
118 |
attaagcatgacaatcattctatttaactgnnnnnnnnnnnnnnnnnnnnaaattcgaagagtatcttctctcatggatagatatgaactatcataaaat |
217 |
Q |
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|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49672878 |
attaagcatgacaatcattctatttaactg--tattttttatttttttttaacttcgaagagtatcttctctcatggatagatatgaactatcataaaat |
49672781 |
T |
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| Q |
218 |
ataatagtatcgtgtagtttaatcaatccaacctagtaagataatgtttgattgttgtattt |
279 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
49672780 |
ataatagtatcgtgtagtttagtcaatccaacctagtaagataatgtttgattgttgtattt |
49672719 |
T |
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